Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00538 TCTTCCAAAGGGGTTTCTATTCTTGAGTGAGCCTCCAAATCCACTTGGTGAGCATAGGAGAGCTTCGGTGATTGAGAGAATCTACTTCCAGCCCCCAAACGACATAGTCCAAGCTGCCCACCCCCTTTGAAAAATTGCAAGATGTTTTGAGCAATAAACCCAACGAGTCTCGTGACTATGTTGGGTCTCTAAAGATGGATTCTCACAACACAGCTGCTGAGAGCCAGACATCCTCAAAAAGGCCATCCATGGTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCGTTGGCATTTGTTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTGTAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGAAAAACAACTTGTGCACTGTCTCAGATGATAGATCCTCGAGTCCAGTTAATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGTTTATCTGGAATGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATGTTACAGAATGGCATTGGCGAAGTTTCCTCGTGTTGATCGAAAAAAATGGTCCATTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAGGAGATGGTGCTTCAGATTTCGGTGGACCAAATCAGTGGGCTACAAGGATTTTCTGCGGATTCGGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATAAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCATGGTCGCTCAGGAGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGAGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATCGAGATAGCAGTTTCATCAGGTACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGCGTGAGAGATTGGCAGGCAGTAGCTTCTACTTTAGAAGGACGAGCTGGCACACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAATCGCTTGAAAATTGCTGTTCTGCTCCTTGGGCCCAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTACCATCACGTACAGATAATGACTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCCCTTATTAGCAACTTTGTCGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTGCTGACTTTCGACCCAGGCTAAATACAGATATATTATGTCATACTGATGATCCAAAACCTGCCCCAAAAAGAAATGCGAAGACGAGGAAGATGCCAGTGTCGAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAGGAAGAGGAAATCAAATTACCAGAGGAATCAGGCTGATGCAACCGCTCGGGTGGGTATTGCAAATAATACCTCTTCTGTCCCAGAGGAAGTTCAATCTTTAAAGCCTCCAAGAAAACGAAATAGGCATGAAGCTTGTACCGTGAAGAGAACAGGGGTTCTGGAGCTACATTCTAACAAGTGGTGTGCTAAACAGAATTTGAACACTCGGAGCGTTGGGGTGCAGCTGAGTAGTAAGGAATGTGAGATGACCAACAGTGACTTCACCGAGACTGTTGATGGGAATGGTCTGGAGGTATTTGAGAACAAAATTGCAGATAAGCTTTCTGAAAGAGATGTATTCTTTTCAGAACCAGAAGAAAATCAAAACTCAACTGGATCTTCTGGAGTCTCGGTACTGTCCGAAATGACTAACGACATGGATGAATATAATCCCTCCATCCTTCCAGATACAACATTGTTGGCTAGTACTACCGTGGATGATATCGAAGAATTGAAGGGGAAGAGTGGTGCAGACAGAGATCTGGATGACAGTAACAGTTTCTCGTTACCGCTCAGTTGCTTAGAACTTAGGACAATTGACGGTGAAGGTGTGGACAGTTATTCCGTGGACAAATCAACAGATAAAAGCCATGAGGTTTGCAAGCAACCCCAAGGCAGAAGGAAGAAAAATAGCAAAACATCACATAAAAACCACAATTATTCATTTCTTTCTTGTCAACAAGTGGAGCAGGAGAGGTTGGGGATGAATGAGCCTCGTCATCGTAATCAATCAAAGAAGAGAAAACATAGTAGTACAAATACGAGTTTGTTAGGAACATTGGAGGCAGTTGAGGAGGTTGATAACTGCACTCTAGTCGGCTTTTTGCAAAAAAGATTGAAGAAAGTTGATTGCAGTTCTGGTACTCCCTTAGAAGTTGATAACGATGACAATGATCGTATTGCCTCGTTTCTTAATAAATTGAAGAGAAAAAAACATCAGCCACCTAGTGATGGTTGAGTTAAATTAAGGTAGGATGACATGGTTTTGTTGCATTTTTGGGATATCTGAAGCAACATCACATTGAATCTCGGAAGAAGGTTGATGGAAGGCTGTACAAATAAAGCTTCCAAGGCTGAATGGCTAAATGCTCAACTATACGTTTGATTCTATGGTTGACAAATTTTTGTTTCGTGATTTAGCTAAGAGGGCTTTGGCAATTTTGTTTTGTTTTGGTTCATTTTCTTTTTCTAATTTGTTAATTTTTTTTTTTTTCTGAGAAGGTAGCATGATCTTCTCTTTGTACATTTATCTCACAATCTTAATGAAATTATTAAGGTATGAAGATTTTTTTTTGGTTGTGAA 3113 41.18 MDSHNTAAESQTSSKRPSMVAFEKGSLPKAALAFVDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRCKILKDFQGSCKRKTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSGMYYGPAENSHVACYRMALAKFPRVDRKKWSIVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLHGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAIFGVRDWQAVASTLEGRAGTQCSNRWKKSLDPARTKRGHFTPDEDNRLKIAVLLLGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPADFRPRLNTDILCHTDDPKPAPKRNAKTRKMPVSRNEKSATGDAPRKRKSNYQRNQADATARVGIANNTSSVPEEVQSLKPPRKRNRHEACTVKRTGVLELHSNKWCAKQNLNTRSVGVQLSSKECEMTNSDFTETVDGNGLEVFENKIADKLSERDVFFSEPEENQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASTTVDDIEELKGKSGADRDLDDSNSFSLPLSCLELRTIDGEGVDSYSVDKSTDKSHEVCKQPQGRRKKNSKTSHKNHNYSFLSCQQVEQERLGMNEPRHRNQSKKRKHSSTNTSLLGTLEAVEEVDNCTLVGFLQKRLKKVDCSSGTPLEVDNDDNDRIASFLNKLKRKKHQPPSDG 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12492758 12510531 - XM_039049793.1 Bhi11g00538 49250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00538 857 MobiDBLite consensus disorder prediction 490 533 - -
Bhi11g00538 857 CDD SANT 403 446 IPR001005 -
Bhi11g00538 857 ProSiteProfiles Myb-like domain profile. 238 290 IPR001005 -
Bhi11g00538 857 MobiDBLite consensus disorder prediction 490 568 - -
Bhi11g00538 857 ProSiteProfiles Myb-like domain profile. 291 342 IPR001005 -
Bhi11g00538 857 ProSiteProfiles Myb-like domain profile. 344 395 IPR001005 -
Bhi11g00538 857 Gene3D - 346 400 - -
Bhi11g00538 857 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 348 395 IPR017930 -
Bhi11g00538 857 Gene3D - 295 345 - -
Bhi11g00538 857 SUPERFAMILY Homeodomain-like 275 344 IPR009057 -
Bhi11g00538 857 MobiDBLite consensus disorder prediction 534 556 - -
Bhi11g00538 857 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 25 794 - -
Bhi11g00538 857 CDD SANT 298 342 IPR001005 -
Bhi11g00538 857 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 396 450 IPR017930 -
Bhi11g00538 857 Gene3D - 403 449 - -
Bhi11g00538 857 ProSiteProfiles Myb-like domain profile. 396 446 IPR001005 -
Bhi11g00538 857 Gene3D - 240 291 - -
Bhi11g00538 857 MobiDBLite consensus disorder prediction 1 20 - -
Bhi11g00538 857 SMART sant 295 344 IPR001005 -
Bhi11g00538 857 SMART sant 400 448 IPR001005 -
Bhi11g00538 857 SMART sant 142 239 IPR001005 -
Bhi11g00538 857 SMART sant 348 397 IPR001005 -
Bhi11g00538 857 SMART sant 242 292 IPR001005 -
Bhi11g00538 857 MobiDBLite consensus disorder prediction 726 744 - -
Bhi11g00538 857 Pfam Myb-like DNA-binding domain 243 288 IPR001005 -
Bhi11g00538 857 Pfam Myb-like DNA-binding domain 349 395 IPR001005 -
Bhi11g00538 857 Pfam Myb-like DNA-binding domain 296 340 IPR001005 -
Bhi11g00538 857 Pfam Myb-like DNA-binding domain 402 445 IPR001005 -
Bhi11g00538 857 SUPERFAMILY Homeodomain-like 346 442 IPR009057 -
Bhi11g00538 857 MobiDBLite consensus disorder prediction 1 19 - -
Bhi11g00538 857 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 291 346 IPR017930 -
Bhi11g00538 857 SUPERFAMILY Homeodomain-like 235 291 IPR009057 -
Bhi11g00538 857 MobiDBLite consensus disorder prediction 723 759 - -
Bhi11g00538 857 CDD SANT 352 393 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00538 K09422 MYBP; transcription factor MYB, plant - csv:101216287 1436.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00538 Bhi-Chr11:12492758 Bhi11g00542 Bhi-Chr11:12492758 0 dispersed
Bhi11g00538 Bhi-Chr11:12492758 Bhi11g00539 Bhi-Chr11:12492758 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g00542 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00543 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00544 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00545 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00540 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00539 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00541 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00546 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00538 . 26 478 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00542 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00543 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00544 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00545 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00540 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00539 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00541 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00546 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00538 . 26 478 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2317 PF00249 Myb_DNA-binding 1.20E-09 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00538 Bhi_Chr11 FPKM 5.517731 7.407045 5.153518 6.5091 21.886118 13.956877 15.841259 22.324791 20.97987 20.541595