Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00544 ATTTTAGTTTCTTCAGCCCTAGACCCACGCTCAGACCCGCCTAAATCTCTCTGTTCTCTTTCACGTTATGCGAGCAGACCCACGCCGCCACTGCCGCTCAACCGCCCGCCGCCTCCGTCGCATGTCCGCCGGCCGCTTCTGCTCAGATTCCCTCGCTGCTCCGTCGGAAATTTTCTCCCTTGCCCAATCTATCTCTCTCTCTGAGTAGTTTGACAGCGTCGCCGCCGTGTCTGTATCAGCCGCCGCGATCAGACCTTCACCTCGCCGCCATCGTCGGATTTTGATTGAATTTGTGAGGTTGGATTTGAAGTTTTGAGGGGTTTAAAGCTGCTGTCCAGCAACGTTAAAGGTTGTTTTTGGCGGTTTAGCTTTTGGGTCTGATTTTGAAGTTTTGAAGTGGTTTCGGATCAAACCACTTATTGGGATTCAAGGTTGTGGTAACTAGGAGGGAGGTTGGTTTGCTTGGATAAGTATACATTTGGACTTATTTTTCGAGGTCTTGGCAAGGTGGACCTAGGCGATTGATGTGGTTTTGCTGGAGCGAGGTCATGGGTGACTTAGAGGATTTTAGCTATTTTTGAAGTTTGAAAAGGTTGGATTGTGGTTATGTAAATGGTTTTTGTAAGTGATGTTGAGGCAACCCCAAGTGTGTGCCTCAGGCAAGAAGCGAGGCGACCTGAGGTCTTCTCACCTCTGCGTACGTGTTGCTCATACAACCATGTCTTGCCACAACCATGGCGATGAAGGTGATGTTGAGCTTCCTGCCAACAAGGAAGATGATGTGGTTGATGAGGACATGGAAGTCCTTCAGAGAGCCTATAGGCTTGTTGGAGTTAATCCAGAGGATTATATTAATCCTAGGCTGTCATCACCTGCCGTAGGAGATGCTAATTCTGGTTTTGATTCTGATGATGATGATTTCGAACTTCTTCGAAATATTCAGAACCGATTCTCGATTGTGGATGATGAGCAGCCGTTGAGTACTCTCCCACCAGTGTCCCTAGATGAGGAGGAAGATGAATTTGAGATGCTTCGTTCAATACAACGGCGCTTTGCGGCGTATGAAAGTGATGTTTTGAGCAATAAACCCAACGAGTCTCGTGACTATGTTGGGTCTCTAAAGATGGATTCTCACAACACAGCTGCTGAGAGCCAGACATCCTCAAAAAGGCCATCCATGGTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCGTTGGCATTTGTTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTGTAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGAAAAACAACTTGTGCACTGTCTCAGATGATAGATCCTCGAGTCCAGTTAATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGTTTATCTGGAATGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATGTTACAGAATGGCATTGGCGAAGTTTCCTCGTGTTGATCGAAAAAAATGGTCCATTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAGGAGATGGTGCTTCAGATTTCGGTGGACCAAATCAGTGGGCTACAAGGATTTTCTGCGGATTCGGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATAAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCATGGTCGCTCAGGAGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGAGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATCGAGATAGCAGTTTCATCAGGTACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGCGTGAGAGATTGGCAGGCAGTAGCTTCTACTTTAGAAGGACGAGCTGGCACACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAATCGCTTGAAAATTGCTGTTCTGCTCCTTGGGCCCAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTACCATCACGTACAGATAATGACTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCCCTTATTAGCAACTTTGTCGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTGCTGACTTTCGACCCAGGCTAAATACAGATATATTATGTCATACTGATGATCCAAAACCTGCCCCAAAAAGAAATGCGAAGACGAGGAAGATGCCAGTGTCGAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAGGAAGAGGAAATCAAATTACCAGAGGAATCAGGCTGATGCAACCGCTCGGGTGGGTATTGCAAATAATACCTCTTCTGTCCCAGAGGAAGTTCAATCTTTAAAGCCTCCAAGAAAACGAAATAGGCATGAAGCTTGTACCGTGAAGAGAACAGGGGTTCTGGAGCTACATTCTAACAAGTGGTGTGCTAAACAGAATTTGAACACTCGGAGCGTTGGGGTGCAGCTGAGTAGTAAGGAATGTGAGATGACCAACAGTGACTTCACCGAGACTGTTGATGGGAATGGTCTGGAGGTATTTGAGAACAAAATTGCAGATAAGCTTTCTGAAAGAGATGTATTCTTTTCAGAACCAGAAGAAAATCAAAACTCAACTGGATCTTCTGGAGTCTCGGTACTGTCCGAAATGACTAACGACATGGATGAATATAATCCCTCCATCCTTCCAGATACAACATTGTTGGCTAGTACTACCGTGGATGATATCGAAGAATTGAAGGGGAAGAGTGGTGCAGACAGAGATCTGGATGACAGTAACAGTTTCTCGTTACCGCTCAGTTGCTTAGAACTTAGGACAATTGACGGTGAAGGTGTGGACAGTTATTCCGTGGACAAATCAACAGATAAAAGCCATGAGGTTTGCAAGCAACCCCAAGGCAGAAGGAAGAAAAATAGCAAAACATCACATAAAAACCACAATTATTCATTTCTTTCTTGTCAACAAGTGGAGCAGGAGAGGTTGGGGATGAATGAGCCTCGTCATCGTAATCAATCAAAGAAGAGAAAACATAGTAGTACAAATACGAGTTTGTTAGGAACATTGGAGGCAGTTGAGGAGGTTGATAACTGCACTCTAGTCGGCTTTTTGCAAAAAAGATTGAAGAAAGTTGATTGCAGTTCTGGTACTCCCTTAGAAGTTGATAACGATGACAATGATCGTATTGCCTCGTTTCTTAATAAATTGAAGAGAAAAAAACATCAGCCACCTAGTGATGGTTGAGTTAAATTAAGGTAGGATGACATGGTTTTGTTGCATTTTTGGGATATCTGAAGCAACATCACATTGAATCTCGGAAGAAGGTTGATGGAAGGCTGTACAAATAAAGCTTCCAAGGCTGAATGGCTAAATGCTCAACTATACGTTTGATTCTATGGTTGACAAATTTTTGTTTCGTGATTTAGCTAAGAGGGCTTTGGCAATTTTGTTTTGTTTTGGTTCATTTTCTTTTTCTAATTTGTTAATTTTTTTTTTTTTCTGAGAAGGTAGCATGATCTTCTCTTTGTACATTTATCTCACAATCTTAATGAAATTATTAAGGTATGAAGATTTTTTTTTGGTTGTGAA 4042 42.75 MLRQPQVCASGKKRGDLRSSHLCVRVAHTTMSCHNHGDEGDVELPANKEDDVVDEDMEVLQRAYRLVGVNPEDYINPRLSSPAVGDANSGFDSDDDDFELLRNIQNRFSIVDDEQPLSTLPPVSLDEEEDEFEMLRSIQRRFAAYESDVLSNKPNESRDYVGSLKMDSHNTAAESQTSSKRPSMVAFEKGSLPKAALAFVDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRCKILKDFQGSCKRKTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSGMYYGPAENSHVACYRMALAKFPRVDRKKWSIVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLHGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAIFGVRDWQAVASTLEGRAGTQCSNRWKKSLDPARTKRGHFTPDEDNRLKIAVLLLGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPADFRPRLNTDILCHTDDPKPAPKRNAKTRKMPVSRNEKSATGDAPRKRKSNYQRNQADATARVGIANNTSSVPEEVQSLKPPRKRNRHEACTVKRTGVLELHSNKWCAKQNLNTRSVGVQLSSKECEMTNSDFTETVDGNGLEVFENKIADKLSERDVFFSEPEENQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASTTVDDIEELKGKSGADRDLDDSNSFSLPLSCLELRTIDGEGVDSYSVDKSTDKSHEVCKQPQGRRKKNSKTSHKNHNYSFLSCQQVEQERLGMNEPRHRNQSKKRKHSSTNTSLLGTLEAVEEVDNCTLVGFLQKRLKKVDCSSGTPLEVDNDDNDRIASFLNKLKRKKHQPPSDG 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12492758 12523614 - XM_039049787.1 Bhi11g00544 49256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00544 1022 MobiDBLite consensus disorder prediction 655 698 - -
Bhi11g00544 1022 Pfam Myb-like DNA-binding domain 408 453 IPR001005 -
Bhi11g00544 1022 Pfam Myb-like DNA-binding domain 461 505 IPR001005 -
Bhi11g00544 1022 Pfam Myb-like DNA-binding domain 514 560 IPR001005 -
Bhi11g00544 1022 Pfam Myb-like DNA-binding domain 567 610 IPR001005 -
Bhi11g00544 1022 CDD SANT 568 611 IPR001005 -
Bhi11g00544 1022 ProSiteProfiles Myb-like domain profile. 403 455 IPR001005 -
Bhi11g00544 1022 MobiDBLite consensus disorder prediction 888 924 - -
Bhi11g00544 1022 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 456 511 IPR017930 -
Bhi11g00544 1022 ProSiteProfiles Myb-like domain profile. 561 611 IPR001005 -
Bhi11g00544 1022 SUPERFAMILY Homeodomain-like 440 509 IPR009057 -
Bhi11g00544 1022 Gene3D - 405 456 - -
Bhi11g00544 1022 ProSiteProfiles Myb-like domain profile. 456 507 IPR001005 -
Bhi11g00544 1022 Gene3D - 511 565 - -
Bhi11g00544 1022 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 513 560 IPR017930 -
Bhi11g00544 1022 SMART sant 460 509 IPR001005 -
Bhi11g00544 1022 SMART sant 407 457 IPR001005 -
Bhi11g00544 1022 SMART sant 565 613 IPR001005 -
Bhi11g00544 1022 SMART sant 307 404 IPR001005 -
Bhi11g00544 1022 SMART sant 513 562 IPR001005 -
Bhi11g00544 1022 SUPERFAMILY Homeodomain-like 511 607 IPR009057 -
Bhi11g00544 1022 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 47 959 - -
Bhi11g00544 1022 MobiDBLite consensus disorder prediction 891 909 - -
Bhi11g00544 1022 CDD SANT 517 558 IPR001005 -
Bhi11g00544 1022 CDD SANT 463 507 IPR001005 -
Bhi11g00544 1022 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 561 615 IPR017930 -
Bhi11g00544 1022 SUPERFAMILY Homeodomain-like 400 456 IPR009057 -
Bhi11g00544 1022 MobiDBLite consensus disorder prediction 699 721 - -
Bhi11g00544 1022 Gene3D - 568 614 - -
Bhi11g00544 1022 MobiDBLite consensus disorder prediction 655 733 - -
Bhi11g00544 1022 ProSiteProfiles Myb-like domain profile. 509 560 IPR001005 -
Bhi11g00544 1022 Gene3D - 460 510 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00544 K09422 MYBP; transcription factor MYB, plant - csv:101216287 1627.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00542 Bhi-Chr11:12492758 Bhi11g00544 Bhi-Chr11:12492758 0 dispersed
Bhi11g00544 Bhi-Chr11:12492758 Bhi11g00546 Bhi-Chr11:12492758 0 dispersed
Bhi11g00543 Bhi-Chr11:12492758 Bhi11g00544 Bhi-Chr11:12492758 0 tandem
Bhi11g00544 Bhi-Chr11:12492758 Bhi11g00545 Bhi-Chr11:12492758 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g00542 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00543 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00544 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00545 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00540 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00539 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00541 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00546 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00538 . 26 478 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00542 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00543 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00544 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00545 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00540 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00539 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00541 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00546 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00538 . 26 478 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2323 PF00249 Myb_DNA-binding 1.50E-09 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00544 Bhi_Chr11 FPKM 7.478277 7.864585 6.357065 5.913908 6.533873 8.789845 9.557759 6.08707 6.225605 6.167009