Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00546 TTTTAGTTTCTTCAGCCCTAGACCCACGCTCAGACCCGCCTAAATCTCTCTGTTCTCTTTCACGTTATGCGAGCAGACCCACGCCGCCACTGCCGCTCAACCGCCCGCCGCCTCCGTCGCATGTCCGCCGGCCGCTTCTGCTCAGATTCCCTCGCTGCTCCGTCGGAAATTTTCTCCCTTGCCCAATCTATCTCTCTCTCTGAGTAGTTTGACAGCGTCGCCGCCGTGTCTGTATCAGCCGCCGCGATCAGACCTTCACCTCGCCGCCATCGTCGGATTTTGATTGAATTTGTGTACGTGTTGCTCATACAACCATGTCTTGCCACAACCATGGCGATGAAGGTGATGTTGAGCTTCCTGCCAACAAGGAAGATGATGTGGTTGATGAGGACATGGAAGTCCTTCAGAGAGCCTATAGGCTTGTTGGAGTTAATCCAGAGGATTATATTAATCCTAGGCTGTCATCACCTGCCGTAGGAGATGCTAATTCTGGTTTTGATTCTGATGATGATGATTTCGAACTTCTTCGAAATATTCAGAACCGATTCTCGATTGTGGATGATGAGCAGCCGTTGAGTACTCTCCCACCAGTGTCCCTAGATGAGGAGGAAGATGAATTTGAGATGCTTCGTTCAATACAACGGCGCTTTGCGGCGTATGAAAGTGATGTTTTGAGCAATAAACCCAACGAGTCTCGTGACTATGTTGGGTCTCTAAAGATGGATTCTCACAACACAGCTGCTGAGAGCCAGACATCCTCAAAAAGGCCATCCATGGTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCGTTGGCATTTGTTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTGTAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGAAAAACAACTTGTGCACTGTCTCAGATGATAGATCCTCGAGTCCAGTTAATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGTTTATCTGGAATGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATGTTACAGAATGGCATTGGCGAAGTTTCCTCGTGTTGATCGAAAAAAATGGTCCATTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAGGAGATGGTGCTTCAGATTTCGGTGGACCAAATCAGTGGGCTACAAGGATTTTCTGCGGATTCGGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATAAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCATGGTCGCTCAGGAGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGAGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATCGAGATAGCAGTTTCATCAGGTACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGCGTGAGAGATTGGCAGGCAGTAGCTTCTACTTTAGAAGGACGAGCTGGCACACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAATCGCTTGAAAATTGCTGTTCTGCTCCTTGGGCCCAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTACCATCACGTACAGATAATGACTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCCCTTATTAGCAACTTTGTCGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTGCTGACTTTCGACCCAGGCTAAATACAGATATATTATGTCATACTGATGATCCAAAACCTGCCCCAAAAAGAAATGCGAAGACGAGGAAGATGCCAGTGTCGAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAGGAAGAGGAAATCAAATTACCAGAGGAATCAGGCTGATGCAACCGCTCGGGTGGGTATTGCAAATAATACCTCTTCTGTCCCAGAGGAAGTTCAATCTTTAAAGCCTCCAAGAAAACGAAATAGGCATGAAGCTTGTACCGTGAAGAGAACAGGGGTTCTGGAGCTACATTCTAACAAGTGGTGTGCTAAACAGAATTTGAACACTCGGAGCGTTGGGGTGCAGCTGAGTAGTAAGGAATGTGAGATGACCAACAGTGACTTCACCGAGACTGTTGATGGGAATGGTCTGGAGGTATTTGAGAACAAAATTGCAGATAAGCTTTCTGAAAGAGATGTATTCTTTTCAGAACCAGAAGAAAATCAAAACTCAACTGGATCTTCTGGAGTCTCGGTACTGTCCGAAATGACTAACGACATGGATGAATATAATCCCTCCATCCTTCCAGATACAACATTGTTGGCTAGTACTACCGTGGATGATATCGAAGAATTGAAGGGGAAGAGTGGTGCAGACAGAGATCTGGATGACAGTAACAGTTTCTCGTTACCGCTCAGTTGCTTAGAACTTAGGACAATTGACGGTGAAGGTGTGGACAGTTATTCCGTGGACAAATCAACAGATAAAAGCCATGAGGTTTGCAAGCAACCCCAAGGCAGAAGGAAGAAAAATAGCAAAACATCACATAAAAACCACAATTATTCATTTCTTTCTTGTCAACAAGTGGAGCAGGAGAGGTTGGGGATGAATGAGCCTCGTCATCGTAATCAATCAAAGAAGAGAAAACATAGTAGTACAAATACGAGTTTGTTAGGAACATTGGAGGCAGTTGAGGAGGTTGATAACTGCACTCTAGTCGGCTTTTTGCAAAAAAGATTGAAGAAAGTTGATTGCAGTTCTGGTACTCCCTTAGAAGTTGATAACGATGACAATGATCGTATTGCCTCGTTTCTTAATAAATTGAAGAGAAAAAAACATCAGCCACCTAGTGATGGTTGAGTTAAATTAAGGTAGGATGACATGGTTTTGTTGCATTTTTGGGATATCTGAAGCAACATCACATTGAATCTCGGAAGAAGGTTGATGGAAGGCTGTACAAATAAAGCTTCCAAGGCTGAATGGCTAAATGCTCAACTATACGTTTGATTCTATGGTTGACAAATTTTTGTTTCGTGATTTAGCTAAGAGGGCTTTGGCAATTTTGTTTTGTTTTGGTTCATTTTCTTTTTCTAATTTGTTAATTTTTTTTTTTTTCTGAGAAGGTAGCATGATCTTCTCTTTGTACATTTATCTCACAATCTTAATGAAATTATTAAGGTATGAAGATTTTTTTTTGGTTGTGAA 3638 42.63 MSCHNHGDEGDVELPANKEDDVVDEDMEVLQRAYRLVGVNPEDYINPRLSSPAVGDANSGFDSDDDDFELLRNIQNRFSIVDDEQPLSTLPPVSLDEEEDEFEMLRSIQRRFAAYESDVLSNKPNESRDYVGSLKMDSHNTAAESQTSSKRPSMVAFEKGSLPKAALAFVDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRCKILKDFQGSCKRKTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSGMYYGPAENSHVACYRMALAKFPRVDRKKWSIVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLHGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAIFGVRDWQAVASTLEGRAGTQCSNRWKKSLDPARTKRGHFTPDEDNRLKIAVLLLGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPADFRPRLNTDILCHTDDPKPAPKRNAKTRKMPVSRNEKSATGDAPRKRKSNYQRNQADATARVGIANNTSSVPEEVQSLKPPRKRNRHEACTVKRTGVLELHSNKWCAKQNLNTRSVGVQLSSKECEMTNSDFTETVDGNGLEVFENKIADKLSERDVFFSEPEENQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASTTVDDIEELKGKSGADRDLDDSNSFSLPLSCLELRTIDGEGVDSYSVDKSTDKSHEVCKQPQGRRKKNSKTSHKNHNYSFLSCQQVEQERLGMNEPRHRNQSKKRKHSSTNTSLLGTLEAVEEVDNCTLVGFLQKRLKKVDCSSGTPLEVDNDDNDRIASFLNKLKRKKHQPPSDG 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12492758 12523613 - XM_039049792.1 Bhi11g00546 49258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00546 992 MobiDBLite consensus disorder prediction 669 691 - -
Bhi11g00546 992 CDD SANT 487 528 IPR001005 -
Bhi11g00546 992 Pfam Myb-like DNA-binding domain 537 580 IPR001005 -
Bhi11g00546 992 Pfam Myb-like DNA-binding domain 378 423 IPR001005 -
Bhi11g00546 992 Pfam Myb-like DNA-binding domain 431 475 IPR001005 -
Bhi11g00546 992 Pfam Myb-like DNA-binding domain 484 530 IPR001005 -
Bhi11g00546 992 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 17 929 - -
Bhi11g00546 992 MobiDBLite consensus disorder prediction 858 895 - -
Bhi11g00546 992 MobiDBLite consensus disorder prediction 1 23 - -
Bhi11g00546 992 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 483 530 IPR017930 -
Bhi11g00546 992 MobiDBLite consensus disorder prediction 625 703 - -
Bhi11g00546 992 SUPERFAMILY Homeodomain-like 370 426 IPR009057 -
Bhi11g00546 992 Gene3D - 538 584 - -
Bhi11g00546 992 ProSiteProfiles Myb-like domain profile. 426 477 IPR001005 -
Bhi11g00546 992 MobiDBLite consensus disorder prediction 625 668 - -
Bhi11g00546 992 MobiDBLite consensus disorder prediction 1 17 - -
Bhi11g00546 992 Gene3D - 481 535 - -
Bhi11g00546 992 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 426 481 IPR017930 -
Bhi11g00546 992 SMART sant 377 427 IPR001005 -
Bhi11g00546 992 SMART sant 535 583 IPR001005 -
Bhi11g00546 992 SMART sant 277 374 IPR001005 -
Bhi11g00546 992 SMART sant 483 532 IPR001005 -
Bhi11g00546 992 SMART sant 430 479 IPR001005 -
Bhi11g00546 992 ProSiteProfiles Myb-like domain profile. 479 530 IPR001005 -
Bhi11g00546 992 SUPERFAMILY Homeodomain-like 410 479 IPR009057 -
Bhi11g00546 992 Gene3D - 375 426 - -
Bhi11g00546 992 MobiDBLite consensus disorder prediction 861 879 - -
Bhi11g00546 992 ProSiteProfiles Myb-like domain profile. 373 425 IPR001005 -
Bhi11g00546 992 CDD SANT 538 581 IPR001005 -
Bhi11g00546 992 Gene3D - 430 480 - -
Bhi11g00546 992 SUPERFAMILY Homeodomain-like 481 577 IPR009057 -
Bhi11g00546 992 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 531 585 IPR017930 -
Bhi11g00546 992 CDD SANT 433 477 IPR001005 -
Bhi11g00546 992 ProSiteProfiles Myb-like domain profile. 531 581 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00546 K09422 MYBP; transcription factor MYB, plant - csv:101216287 1627.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00540 Bhi-Chr11:12492758 Bhi11g00546 Bhi-Chr11:12492758 0 dispersed
Bhi11g00541 Bhi-Chr11:12492758 Bhi11g00546 Bhi-Chr11:12492758 0 dispersed
Bhi11g00544 Bhi-Chr11:12492758 Bhi11g00546 Bhi-Chr11:12492758 0 dispersed
Bhi11g00546 Bhi-Chr11:12492758 Bhi11g02258 Bhi-Chr11:61549675 4.98E-14 dispersed
Bhi11g00545 Bhi-Chr11:12492758 Bhi11g00546 Bhi-Chr11:12492758 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g00542 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00543 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00544 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00545 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00540 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00539 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00541 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00546 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00538 . 26 478 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00542 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00543 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00544 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00545 . 191 643 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00540 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00539 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00541 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00546 . 161 613 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
Bhi11g00538 . 26 478 MYB-Related Transcription Factor Family AT3G18100 57.8 4.9e-150 529.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2325 PF00249 Myb_DNA-binding 1.40E-09 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00546 Bhi_Chr11 FPKM 11.368374 13.975822 5.132023 4.139715 2.741573 1.498619 1.991876 16.014963 16.710028 17.354229