Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00572 TCCACCCCACCTTCAACCTCGTTTTCCTCTCTTGCCTCTTCTCCCATGGCCGAACCCATGGAGGAAAACGCGGTTGTTGATGCCGAACCCACTCTTCCCATCGCCGACAAGAGACCAATTGAGATTAATGGCGACGATGAACTTGCGGAGCCTCAGTTGAGGAAGAAACCCCGGAATGGTTGCGACTTGGGTCCGAATCTCAGAAGGGTCGCTGAGATTGTGTTGGTTATGTCCACAATGACGGCGCTGCGTGCTGGGAAGAAGCCGAGTGATGCCGAGGTTGAATTAATGGCTGAAGCTAGGGCTAAGTTAGTTCAGATTTGTGAAGGATTGGCTCCTAAGGATATTGTGGGAAGGGAAGGTATTAGCTCTTTGATTGAAGATTTGGGGTTGCATGGTAATGCTAGGGATCAGAAGTTAGGGTTTCGGGGTCCTAGGTTGACGATAGCGGAGAAGTTGGCGCAGGCAAAGAAGAAGATGGAAGATTCCAAGAAATATGTCCCACCTCCAGGTTATGGATCCCATCCGACCCAAAAAAATTTCAGTTCATCAGTTGAGAGTCGTGGGCCATTGCCTACAGTACGGATGTTTACCTCAGACAAATCAAGTCCTGTTCCGGCTTCTGTGGGAGGCACTGTGGGTACTCTGCCTTCAGGTCATGTTCCTGTCGCTGGTTCTACATCTATACAGGTTCAAGCACAACTACCGAGCAATGAAGTCAGAACACATATTCTTTCAAGTGGATATCCTATTGGTCATCAAGGAAGGGATTCGTCTTCACTCTTGCATGGCATTGAAAGACCATTAAATGGGACATATGGATCTCAAATGCAAGTTAATTCTTTGGTAAATCAACCTCTGGCGAGTGCTTCAACCTGGTCTGCTCAAACTCAATCCACCTTGTCAGCTAAAGGTGGGCCAGAGCACAAGTTTCCCAATCATTCTGCTGTTAATGCTCATCAGGGAACCACAGACTCAAGAGCATTAAGATCGTCTTCTCAAGCAGCCAGGGACCAGAGCTTTAGACCTATTTCTCAAACTGGTACAGGAAATATTACTGGTCTGCAGCCGCCTTTACAGAGCATGAATTTTGTGCAAGGACCTTCACTTCCTAATAACCACAATGAAATTGTCAAAATTGTTCAGAAGCTCTTACAGCCACAGCTTCCTGATCATCCTACTTGGAATCCTCCTTCAAGAGATTACATGAACAAGGCTGTGACTTGCCAAACTTGTCAAGTTACCATTAATGAGATTGATACTGTACTTATATGTGATGCTTGTGAGAAAGGATATCATTTGAAATGTGTACAGTCACCTAATCAGAGAGCAATTCCGAGAGGCGAATGGCACTGCCCAAGATGTTTAACTATAAGCAATGGGAAGCCTTTACCTCCTAAATATGGGCGTGTCATGAGGAGTAACCCACCACCAAAATTATCGGTCAATACCAGTGGAACTCAGCCACCAGAGAAGAGATCAGGAGCCGTAGAACAGAAGGCCAGTGCTGGTCAGCTGAAGTTGGTTTCTAATGGAGGTTCAGATTTGCCAAATCCTCAGCCTGCTGACTATGGAATCAATGTCAATGAATCATCTGGTATCAAAATTCCAAATGTGGATGAGATTCTTGGAAATAATATTTTACCAATTAGAAAAGACATAGATGAGAAACCAACCTCTTCGACTTCCTTGAATACTCCAGCCAAATCCTTGGGGCTGGTTTGTGAACCCTCTTCTGCTGAGTTATCAAGTGAAATGTCAGCTCAGCAAATTAAAAATTCTCTAGCATCAATAGGTGAAGATAAATCCTCAGCGAAAGCAGAGCCTCTAGAAGAATCCCAAACAACAGCCGACAATTCTAGTAACCCTAAACCCCCTGACATTCCTCAAATTGTTGATCAGCAAATGGTTTCTGAAGGTCCGGAGATACCCTCCTCAACAGCAAGTGCTCATGATACTTCAAATGTGAAGAAAGATGGCCATGAAGTTCTGCAGGAGAATAATGTTGAAAATTTTGAAGCTAGCATCATAAATAGAGAGCAGCCCGGGACTTCTTCCAATGACTTGCATAATATTGAATGGATCGGAGACTCATATCAGATTTTAGATATGAGGGCATACTACAAATCCTGTCGGGTTGATGGTGTTACATATAAAGTTGAAGAATTTGCTCTTTTTCAATCCAGCAATGGGAAATTGATGCCCTATAGGCTTCAGTCCTTCAGCCATGAATATGAAAGTGGGTTGAACTGGGCTATTCTTAAGAAGTGTTACTTTTATGAGGACTTGCCAAAGGAAGTTGCCCATCTCCACCTGAGCTCCCCTGAACAAGATGAGGTATATACGTCCGATGGCTATATTTGTTTAGATGTGGGCTTAATTCGAGGCCCATGTGAAGTTCTTCCTGTTGCCAAGTATAAAGAAGAACTTGAAAGACGAAAACAATTGGGTCTTGGGGCAGACAATGGAATAAAGCCAATTTTCCTGTGCAAATGGTTTTATACTGAAGCTAACAAGGAATTTGTACCTTTTACTGGCGCCATCTGTGAAAACTTCTCAGTGACGCAGAGTCCAACCTTGCAAGAACCAGTTGATGGATGAATGTCCCAATATTCAAATGTTTAGAAGTAGGTAGCAATACTCCCAGTTCGTTTCTTCTTTGTGACTGTAATTTAAAGTCGTTTCTTCTCATACCCCATATGAATCCCTAAGTCCTTTCTCCCTCAGGACCGACCCCCTGTTTGTATATTATTGTATCAACAACACATGCCCTGCTTTCACAACGAAAGAGGTGCCCTTGTATTGTAGACATGTGCCATTTTTTAAATGACCGAGATTCATAATATATACATATATATTTTTTACTTGTCA 2871 43.36 MAEPMEENAVVDAEPTLPIADKRPIEINGDDELAEPQLRKKPRNGCDLGPNLRRVAEIVLVMSTMTALRAGKKPSDAEVELMAEARAKLVQICEGLAPKDIVGREGISSLIEDLGLHGNARDQKLGFRGPRLTIAEKLAQAKKKMEDSKKYVPPPGYGSHPTQKNFSSSVESRGPLPTVRMFTSDKSSPVPASVGGTVGTLPSGHVPVAGSTSIQVQAQLPSNEVRTHILSSGYPIGHQGRDSSSLLHGIERPLNGTYGSQMQVNSLVNQPLASASTWSAQTQSTLSAKGGPEHKFPNHSAVNAHQGTTDSRALRSSSQAARDQSFRPISQTGTGNITGLQPPLQSMNFVQGPSLPNNHNEIVKIVQKLLQPQLPDHPTWNPPSRDYMNKAVTCQTCQVTINEIDTVLICDACEKGYHLKCVQSPNQRAIPRGEWHCPRCLTISNGKPLPPKYGRVMRSNPPPKLSVNTSGTQPPEKRSGAVEQKASAGQLKLVSNGGSDLPNPQPADYGINVNESSGIKIPNVDEILGNNILPIRKDIDEKPTSSTSLNTPAKSLGLVCEPSSAELSSEMSAQQIKNSLASIGEDKSSAKAEPLEESQTTADNSSNPKPPDIPQIVDQQMVSEGPEIPSSTASAHDTSNVKKDGHEVLQENNVENFEASIINREQPGTSSNDLHNIEWIGDSYQILDMRAYYKSCRVDGVTYKVEEFALFQSSNGKLMPYRLQSFSHEYESGLNWAILKKCYFYEDLPKEVAHLHLSSPEQDEVYTSDGYICLDVGLIRGPCEVLPVAKYKEELERRKQLGLGADNGIKPIFLCKWFYTEANKEFVPFTGAICENFSVTQSPTLQEPVDG 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12918755 12929977 - XM_039048837.1 Bhi11g00572 49284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00572 851 Pfam PHD-finger 394 441 IPR019787 -
Bhi11g00572 851 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 7 830 - -
Bhi11g00572 851 MobiDBLite consensus disorder prediction 1 25 - -
Bhi11g00572 851 CDD BAH 700 830 - -
Bhi11g00572 851 ProSitePatterns Zinc finger PHD-type signature. 394 440 IPR019786 -
Bhi11g00572 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 455 IPR013083 -
Bhi11g00572 851 ProSiteProfiles Zinc finger PHD-type profile. 391 443 IPR019787 -
Bhi11g00572 851 MobiDBLite consensus disorder prediction 584 615 - -
Bhi11g00572 851 MobiDBLite consensus disorder prediction 451 488 - -
Bhi11g00572 851 MobiDBLite consensus disorder prediction 160 174 - -
Bhi11g00572 851 MobiDBLite consensus disorder prediction 301 341 - -
Bhi11g00572 851 MobiDBLite consensus disorder prediction 462 477 - -
Bhi11g00572 851 MobiDBLite consensus disorder prediction 144 191 - -
Bhi11g00572 851 MobiDBLite consensus disorder prediction 594 613 - -
Bhi11g00572 851 Gene3D - 680 849 IPR043151 -
Bhi11g00572 851 SUPERFAMILY FYVE/PHD zinc finger 384 450 IPR011011 -
Bhi11g00572 851 MobiDBLite consensus disorder prediction 279 341 - -
Bhi11g00572 851 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 7 830 - -
Bhi11g00572 851 ProSiteProfiles BAH domain profile. 701 830 IPR001025 GO:0003682
Bhi11g00572 851 SMART PHD_3 393 441 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00572 - - - csv:101222588 1471.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00572 Bhi-Chr11:12918755 Bhi03g00243 Bhi-Chr3:5408292 1.21E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2326 PF00628 PHD 2.60E-08 CL0390 Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00572 Bhi_Chr11 FPKM 12.08965 13.367282 8.658161 8.681323 13.797995 13.334467 14.982418 2.444341 2.45029 2.786391