Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00591 GGACCACCACCACCATCACAGCATCTTTTCTTCAAAAACATCCCCTTCCCAATGCGTAACGTTTCACTGCCGCCTCTCTCTCTTGCTTTCTTTGGACCACCGCCGGCATCTTTCTTCAAAAACATCCGCTTCCAAGGTTGCGCAACGCTCCTCCGCCGCTCCTCTCTCCCTCTTCTTCGTCATTTCCTCCGTCTTTTTTCTTCTTCTTCATCACTCTCTCTCTCTCCCCTCTACTTTCTTCAGTCACTCTTCGCTTCAGTCTCAGGATATTTTTTACTTGAAATGGCTGCTTCATCATCTCTTATGTCACACTCTTTGCAAGGGCATGCGTCCACTGAAGCAACAATAAAATGCTGTAAGGGTTATATGTATGGTAGCTTATGTTCATCCTACTCCCGGATTGGATACTCCAAGTCCAAGTTCCTAACAAGTCCTAAGTTGTCACATAATGAGAATTCATCGAAATGGGAATGTATTGAGAAACGTCCAATGAGAAATGAAATCCGGTGCGGAGCTGTGGAAATCGAGGATTCACTTTCTCCTTTTGTTAGCAAAAAGTTTGAGCTTGATGATGTGATTGAAGCTCAACAATTTGATAGAGATATTCTCAATTATATTTTTGAAGTTGCACTTGATATGGAAAAGATTGAAAAAAGTTCGTCTAAAAGCCAAATGCTCAAAGGATATCTGATGGCTACCCTGTTCTACGAGCCCTCAACTAGAACTAGGCTTTCGTTTGAATCTGCCATGAAAAGGTTAGGTGGGGAGGTATTGACAACTGAAAATGCACGGGAGTTTTCTTCAGCCGCCAAAGGAGAAACCCTTGAAGATACCATCAGAACTGTTGAGGGCTACTCAGATATAATTGTGATGCGGCATTTTGAAAGTGGCGCTGCTAGGAAAGCTGCTGCAACAGCTAGCATTCCTATTATTAATGCTGGTGATGGTCCTGGACAACATCCAACTCAGGCTCTTCTAGATGTATATACTATTCAGAGAGAGATAGGAAAACTTGATGGAATTAAAGTCGGACTCGTGGGAGATCTTGCCAATGGGAGAACTGTACGGTCACTTGCATATTTGCTCGCCAAGTATCAAGATGTGAAAATATACTTTGTCTCTCCAGATGTTGTGAAAATGAAGGATGATATAAAAGACTACTTGACATCACAAGATGTAAAATGGGAAGAATGTGACAACTTGATGGAAGTTGCGTCTGAGTGTGATGTGGTATATCAAACTCGTATTCAACGGGAAAGATTTGGAGAGAGGATTGATCTTTATGAACAAGCTAGAGGCAAGTACATTGTGGATAAAAATGTGTTAAAAGTGATGCAGAGACATGCTGTGGTCATGCACCCCCTCCCTAGGCTTGATGAGATCACTGTTGATGTAGATGAGGATCCAAGGGCTGCCTACTTCCGACAAGCGAAGAACGGTCTCTATATTCGGATGGCCCTCGTGAAACTCTTGCTTCTTGGTTGGTGAAGAATGCTACCTTTTCTAAATTTTGCATTTTAAGCATGCTTTAGTTTTACAGGATGATTCTGTTTAAACAAATTACCATGGTTAGAACGTGGCAGTACCACCATGGGTTTTAAGTTTGCTACCAGGTGAATAGCTTGATCCTGTTTGCTAGGGAGAAATGCTAGTTCAATTTGCTGAGTTTTTCAGTTTAAGGATAGCTAGAATGTTGTTGCAATATTAAAGGGTCTGTTTAACCATGTTTCCGTTTACTATTTTCTGTTCCGTTTCTATTTGTTACTTATATTTAAAATTGGGCAGAATTAAAAGAAAAAAGAATGGTTACAAAA 1814 41.12 MRNVSLPPLSLAFFGPPPASFFKNIRFQGCATLLRRSSLPLLRHFLRLFSSSSSLSLSPLYFLQSLFASVSGYFLLEMAASSSLMSHSLQGHASTEATIKCCKGYMYGSLCSSYSRIGYSKSKFLTSPKLSHNENSSKWECIEKRPMRNEIRCGAVEIEDSLSPFVSKKFELDDVIEAQQFDRDILNYIFEVALDMEKIEKSSSKSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAARKAAATASIPIINAGDGPGQHPTQALLDVYTIQREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPDVVKMKDDIKDYLTSQDVKWEECDNLMEVASECDVVYQTRIQRERFGERIDLYEQARGKYIVDKNVLKVMQRHAVVMHPLPRLDEITVDVDEDPRAAYFRQAKNGLYIRMALVKLLLLGW 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13442978 13451988 + XM_039049783.1 Bhi11g00591 49303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00591 478 Hamap Aspartate carbamoyltransferase [pyrB]. 172 477 IPR002082 GO:0004070|GO:0006207
Bhi11g00591 478 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 218 237 IPR006130 GO:0006520|GO:0016597|GO:0016743
Bhi11g00591 478 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 303 314 IPR006130 GO:0006520|GO:0016597|GO:0016743
Bhi11g00591 478 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 430 439 IPR006130 GO:0006520|GO:0016597|GO:0016743
Bhi11g00591 478 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 440 463 IPR006130 GO:0006520|GO:0016597|GO:0016743
Bhi11g00591 478 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 218 225 IPR006130 GO:0006520|GO:0016597|GO:0016743
Bhi11g00591 478 TIGRFAM asp_carb_tr: aspartate carbamoyltransferase 174 475 IPR002082 GO:0004070|GO:0006207
Bhi11g00591 478 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 78 478 - -
Bhi11g00591 478 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 174 315 IPR006132 GO:0006520|GO:0016743
Bhi11g00591 478 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 172 475 IPR036901 GO:0006520|GO:0016597|GO:0016743
Bhi11g00591 478 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 322 473 IPR006131 GO:0006520|GO:0016597|GO:0016743
Bhi11g00591 478 PRINTS Aspartate carbamoyltransferase signature 208 230 - -
Bhi11g00591 478 PRINTS Aspartate carbamoyltransferase signature 248 257 - -
Bhi11g00591 478 PRINTS Aspartate carbamoyltransferase signature 302 319 - -
Bhi11g00591 478 PRINTS Aspartate carbamoyltransferase signature 394 403 - -
Bhi11g00591 478 PRINTS Aspartate carbamoyltransferase signature 434 439 - -
Bhi11g00591 478 PRINTS Aspartate carbamoyltransferase signature 456 470 - -
Bhi11g00591 478 Gene3D Aspartate/ornithine carbamoyltransferase 303 462 IPR036901 GO:0006520|GO:0016597|GO:0016743
Bhi11g00591 478 PANTHER ASPARTATE CARBAMOYLTRANSFERASE, CATALYTIC CHAIN 78 478 - -
Bhi11g00591 478 Gene3D Aspartate/ornithine carbamoyltransferase 175 470 IPR036901 GO:0006520|GO:0016597|GO:0016743
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00591 K00609 pyrB, PYR2; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] - csv:101220705 743.421
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g02159 Bhi-Chr9:60919741 Bhi11g00591 Bhi-Chr11:13442978 2.23E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g558 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00492 . . . . . . . . . . Sed01g2981 . . . . . . Cpe14g00722 . Bhi11g00591 Tan01g1733 Cmetu06g0270 . . . . . . . . . . . . . Chy06g01834 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006067 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 2 1 1 0 1 3 1 1 1 2 0 2 6 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00591 Bhi_Chr11 FPKM 0.0 0.0 0.066956 0.0 0.184663 0.065915 0.190104 0.0 0.0 0.0