Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00629 TATAGATTTTTAAAAAAGGTTCCAAAGAAGAGAAAACCCTAAACCCTACCTTCGCTCCCTCCATTCCCCCACTGATTTTCTTCAGTTCTTTGTACTTCTCCCTCTTCTGTTATTGTTCAGCCGCAGACCTTACCGGCCCACCGCCAGTCACCGGCGCGCCTCCACCGCCATATTTCTTTCTTCGATCCTTATTTCTCCTTCTGGTGCAGTTTCACGCCAACCCCTGGTTTTTTCACAATGAAGAAGAAATTCAAATCCAAGAAGTCTGCCAAGCAGAAGCGACTATCCGAAATTGAAGAAATTAAGATCTTAAATTCATGGATTGAATCACAGAAACCTGACTCAGGCTCCAATCCTATGTCGCTCCCTCCGCCACCCGCGAATTGCCCCGTTGGCCGCATCGACGCCGATACCTACTCTCGTTACGCCGGAGCGACGAGGTTTGATCAGTTGCCGATTTCGAACAAGACCAAAGATGGGTTGCGCAAAGCTGAGTTCGTCGACATGACTGACATACAGAAGGCTTCACTGCCTCACGCGCTTTGTGGTCGAGATATTCTTGGTGCAGCTAAAACTGGTTCAGGAAAGACGCTAGCTTTTCTCATACCTGTTCTTGAAAAATTGTATAGAGAGAGATGGGGTCCTGAGTTCGGAGTAGGGAGTATAATAATATCTCCCACAAGAGAATTAGGAGCTCAGCTGTTTGATGTACTGAAAGCTATTGGAAAATTTCATAATTTCAGCGCTGGCCTTTTAATTGGTGGTCGTAAAGATGTTAACACTGAGAAGGAGCACGTGAATGAGTTGAATATTCTTGTTTGCACTCCTGGTCGACTCCTTCAGCATATGGACGAGACTCCAAATTTTGATTGTTCACAGCTTCAGGTTTTAGTCCTTGATGAAGCGGATCGTATTCTTGATGTTGGATTTAAGAAGACTTTAAATGCTATCGTCTCACAGCTACCTAAGCATAGACAAACCTTTCTGTTCTCAGCAACGCAAACAAAGTCTGTTCAGGATCTGGCCAGACTCAGTTTGAAAGATCCCGAGTACCTTAGTGTCCATGAAGAATCTGTGACTGCCACACCCAATAGTCTACAGCAAACTTCTATGGTTGTTCCTCTCGAGCAGAAGCTGGACATGCTATGGAGCTTTATAAAGGCCCATCTTAATTCTAAGATTCTTGTGTTTCTCTCTAGCTGTAAGCAGGTGAAATTTGTTTTTGAAACTTTCAAAAAGTTGCGCCCTGGAATCCCATTGAAGTGCCTCCATGGAAGGTTGAAGCAGGACAAAAGGATGGGGATATATTCTGAGTTCTGTGAGAAGCGCTCAGTTCTCTTCTCAACAGATGTAGCCGCTAGAGGTCTTGATTTTAATAAGGCTGTTGACTGGGTTGTACAGGTTGATTGCCCAGAAGATGTGGCGTCTTACATACATAGAGTTGGTCGCACTGCCCGGTACCATTCAGGTGGGAGATCAGTTTTATTTATTATGCCCTCGGAAATGAAAATGCTTGAACGATTGGAATCAGCTAAAGTGCCCATTCAGCTTATCAAGGCAAACACAAAAAGACTTCAACCAGTTTCTGGTTTGCTGTCAGCCTTGTTAGTCAAGTACCCTAATTTTCAGCAACTCGCTCAAAGGGCCTTTATCACATATCTTCGGTCAATTCATATCCAGAAGGATAAGGAAATATTTGATGTTATGAAACTGTCAATTGACGAATTTTCAGCTTCGTTGGGGTTGCCAATGACCCCAAAAATTCGTTTTATTGATCAGAAAAGGAGGTCACAGAAGATGTCTGCTAATCCTACCACTTTTCTTGCATTGGATTCGTCGGGTAACGAGAATGTTTTCAATACATCCGATGGAGAATTGGAGTGTGGTGACTTTAAAGAAAGCGACCAAAGACTTCTTCTGCCTATTGATACCCCTTCTAGTGAAGTTGAAGATGCTGCGGCACCTACTCGGATTTTGAAGAAAAAGAAGTTAAAGATAAATGTCCACAGGCCAGTAGGAACGAGAGTCAGTTTTGACGAGGACGGCAACCCACTTGCCCCTCTTGCTAGGCTAGCCGACATCAAAAGTAGCAATGAGACATTTGTAGTCGATAAAGATAAAAAAGATGAGTTTTACAAAAAGAGGAGGGAAGAGTTAAAACAAGCTGACAAGGAAGACAAACTTCTCAATCGTAACCGTCTCAAAGAGAAGAAACGAAAGGAGAAGATGAAGAAGAAGGCTGCCAAAGAAAGTCAGGAGGAGGAGGACGACGTTTCTGGGTCTGAAGAAGACAGACCTCAGAAAAGATCCAAGAAATTTGTTGACAGTGATAGTGATATTGACAATAAAGTAGAAAACAACTTCAATACAGAGTCCATTTCAGTGGCAGAACAAGAGGAGTTGGCTCTCAAATTATTGAGTTCTCTGCAACCATAATTTTCAAAAGGTACTTATATTCCAATTTTCTTAGCAATCCCTTACCCCAATACTAGTTGAGTTTATCACCTATAAACTGTGGAAGGTTTTCTTCTTCTGCGGTTACACAATTTATATTCTTCTGTAGCTTGTGTTCAGGTAAAGCCTTTTCGAAATAGGTCCCTTCTGTATAATTTAATGAGAAATTTTGAGCCACTTCTATTTTTAATTTTAATTTTTACTTTAGTTTATTTCCAAGCA 2676 42.12 MKKKFKSKKSAKQKRLSEIEEIKILNSWIESQKPDSGSNPMSLPPPPANCPVGRIDADTYSRYAGATRFDQLPISNKTKDGLRKAEFVDMTDIQKASLPHALCGRDILGAAKTGSGKTLAFLIPVLEKLYRERWGPEFGVGSIIISPTRELGAQLFDVLKAIGKFHNFSAGLLIGGRKDVNTEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPEYLSVHEESVTATPNSLQQTSMVVPLEQKLDMLWSFIKAHLNSKILVFLSSCKQVKFVFETFKKLRPGIPLKCLHGRLKQDKRMGIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYHSGGRSVLFIMPSEMKMLERLESAKVPIQLIKANTKRLQPVSGLLSALLVKYPNFQQLAQRAFITYLRSIHIQKDKEIFDVMKLSIDEFSASLGLPMTPKIRFIDQKRRSQKMSANPTTFLALDSSGNENVFNTSDGELECGDFKESDQRLLLPIDTPSSEVEDAAAPTRILKKKKLKINVHRPVGTRVSFDEDGNPLAPLARLADIKSSNETFVVDKDKKDEFYKKRREELKQADKEDKLLNRNRLKEKKRKEKMKKKAAKESQEEEDDVSGSEEDRPQKRSKKFVDSDSDIDNKVENNFNTESISVAEQEELALKLLSSLQP 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14644159 14649451 + XM_039049896.1 Bhi11g00629 49341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00629 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 275 IPR027417 -
Bhi11g00629 732 SMART helicmild6 326 409 IPR001650 -
Bhi11g00629 732 SMART ultradead3 86 290 IPR014001 -
Bhi11g00629 732 MobiDBLite consensus disorder prediction 682 705 - -
Bhi11g00629 732 PANTHER RNA HELICASE 59 524 - -
Bhi11g00629 732 SMART DUF4217_3 448 511 IPR025313 -
Bhi11g00629 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 425 IPR027417 -
Bhi11g00629 732 CDD DEADc_DDX10 78 276 - -
Bhi11g00629 732 Coils Coil 652 678 - -
Bhi11g00629 732 CDD SF2_C_DEAD 287 418 - -
Bhi11g00629 732 Gene3D - 55 279 IPR027417 -
Bhi11g00629 732 Pfam Domain of unknown function (DUF4217) 453 509 IPR025313 -
Bhi11g00629 732 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 295 447 IPR001650 -
Bhi11g00629 732 MobiDBLite consensus disorder prediction 30 51 - -
Bhi11g00629 732 Gene3D - 285 526 IPR027417 -
Bhi11g00629 732 Pfam Helicase conserved C-terminal domain 299 408 IPR001650 -
Bhi11g00629 732 MobiDBLite consensus disorder prediction 644 716 - -
Bhi11g00629 732 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 219 227 IPR000629 -
Bhi11g00629 732 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 67 95 IPR014014 GO:0003724
Bhi11g00629 732 Pfam DEAD/DEAH box helicase 91 262 IPR011545 GO:0003676|GO:0005524
Bhi11g00629 732 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 59 524 - -
Bhi11g00629 732 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00629 K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4 [EC:3.6.4.13] - csv:101213480 1295.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01316 Bhi-Chr8:39965304 Bhi11g00629 Bhi-Chr11:14644159 6.65E-78 dispersed
Bhi08g01317 Bhi-Chr8:39965305 Bhi11g00629 Bhi-Chr11:14644159 8.71E-106 dispersed
Bhi11g00629 Bhi-Chr11:14644159 Bhi09g01603 Bhi-Chr9:43010191 3.79E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00629 Bhi_Chr11 FPKM 1.90171 2.58024 4.361547 5.150139 8.183846 8.021865 8.992878 10.776524 13.421041 12.131436