Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00693 TTCTCAAATTTCAAATTTCAAATTTTCGTAATTCAATTATGAAAGCCAATGACATTCCTGATACTAAACGTTCTATTGCAAACTTTCATCCTAGCATTTGGACTGATCATTTCCTTTCAGTTACATTTGATGATGCATTGAAAGTCGATAATGAAATGAAAGAACAAGCTGAAAATTTGAAAGAAGAAATACGGATGATGGTGGTTGTTTCTGTGAAAAACCCATTGGAGAAACTAAAGTTGGTTGATTCAATCCAACGATTAGGTGTATCTTATCATTTCGAAAATGAGATTGACCAAATCTTAGAACATTTATATATATCCTATTCCACTTTATTGAATAAAGATCGCGATGAAGATCTTCATATTATTGTTCTTCTATTTCGACTTCTCAGGCAACAAGGTTATAGAATTTCATGTGATATATTCTCAAAATTCATGGACAATAGTGGAAAATTTAAAGAATCATTGGGTAATGATGAAAAAGGAATTTTGAGCCTATATGAAGCATCACATATGAGGGGACATGGAGAAGCTGTGCTTGAGGAAGCTCTTGAATTTACTACTACACATCTTAAAACATATATTGAATGCTCTAGTAATCCTCATTTTGCCTCTGAAGTTAACAATGCCTTGAAATTTCCTATTAGAAAAGGTGTTACAAGAATCAAGGCAAGAGAGTATTTGGAAATATACGAACAAGATCCTTCCCACAACGAGACTTTGCTTACATTCTCAAAACTAGACTTCAATATATTACAAAAACTTCACCAAAAGGAGTTATGTGAAATCTACAGGTGGTGGAAAGAATTGAATGTCCCAACGAACTTTCCATTTGCGAGAGATAGAATTGTGGAGGATTACTTTTGGGTATTGGGTGTATATTTCGAACCTCATTTCAATGTGGGAAGGAAAATATTGACTAAAGTGATCGCCATGACCTCAATTATGGATGATATTTATGATGCTTATGGAACATTTGAAGAACTCCAAGTCTTCACTTTAGCAATCAACAGATGGGACATAAGCATGATTAATCTACTCCCTAATTATATGAAAGTTTATTATACAACTATGCTCAATCTTTTCGAAGAGATTGATAGAGATATAGCGATTGATGGAACATCGTATCGTGCTCACTTTGCAAAGGAAGCGATGAAAAGGCAAGCTGAATCCTATTTCAAGGAAGCTGAATGGCTAAACAAAAAGCATAAACCAAACTTTGAAGCATACATGGAAGTGGCTTCAGTTAGCTCAGGTTATGCACTACTTGCCACTATTTCATTTGCTTGCATGGGTGATGTTGCAACTCAAGAGGTATTTGATTGGGTTTTTGAGTGCCCAAAAATTCTTGAAGCCTCAACCATCATTGCTAGACTAATGGATGATCTTGTATCCTACGAGTTTGAGAAACAAAGAGAACATGTTGCTTCTGCCGTTGAATGTTACATGAACAGTTATGGCTGCTCAAAAGAAGAAACATATGCTGAATTCAAAAAGAAAGTAGAAGATGCATGGAAGAATATAAATGAATGTAGCCTTCATCCAGCCAGTGTTCCAATGCCATTTTTATTGTGTGTATTAAATCTCACCAGAGTTATTGCCTTGCTTTATTCTGATGAGGATGGATATACAAATGCTAAGGGTAGGACCAAAGTTCTTATCCAGTCTCTTCTTGTTGAACCGGTGCGGTTTTAACTACTTAATGAGGCAACGTTTGTGAAATCCAATATTTATGGGTATATTGTGTGCAATAACGTGTAATATATAGAATTTGAAGGGTCCACAATGCTATTATGTTTTTTCTATCGAATTTATATTGAAAAGAAA 1829 34.72 MKANDIPDTKRSIANFHPSIWTDHFLSVTFDDALKVDNEMKEQAENLKEEIRMMVVVSVKNPLEKLKLVDSIQRLGVSYHFENEIDQILEHLYISYSTLLNKDRDEDLHIIVLLFRLLRQQGYRISCDIFSKFMDNSGKFKESLGNDEKGILSLYEASHMRGHGEAVLEEALEFTTTHLKTYIECSSNPHFASEVNNALKFPIRKGVTRIKAREYLEIYEQDPSHNETLLTFSKLDFNILQKLHQKELCEIYRWWKELNVPTNFPFARDRIVEDYFWVLGVYFEPHFNVGRKILTKVIAMTSIMDDIYDAYGTFEELQVFTLAINRWDISMINLLPNYMKVYYTTMLNLFEEIDRDIAIDGTSYRAHFAKEAMKRQAESYFKEAEWLNKKHKPNFEAYMEVASVSSGYALLATISFACMGDVATQEVFDWVFECPKILEASTIIARLMDDLVSYEFEKQREHVASAVECYMNSYGCSKEETYAEFKKKVEDAWKNINECSLHPASVPMPFLLCVLNLTRVIALLYSDEDGYTNAKGRTKVLIQSLLVEPVRF 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17873970 17880083 + XM_039047673.1 Bhi11g00693 49405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00693 552 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 7 537 - -
Bhi11g00693 552 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 17 225 IPR008930 -
Bhi11g00693 552 Pfam Terpene synthase, N-terminal domain 20 199 IPR001906 GO:0010333|GO:0016829
Bhi11g00693 552 SFLD Terpene Cyclase Like 1 C Terminal Domain 225 550 IPR034741 -
Bhi11g00693 552 SFLD Isoprenoid Synthase Type I 225 550 - -
Bhi11g00693 552 PANTHER OS04G0344100 PROTEIN-RELATED 7 537 - -
Bhi11g00693 552 Pfam Terpene synthase family, metal binding domain 230 494 IPR005630 GO:0000287|GO:0010333|GO:0016829
Bhi11g00693 552 Gene3D Farnesyl Diphosphate Synthase 18 539 IPR008949 -
Bhi11g00693 552 Gene3D - 60 225 IPR036965 GO:0010333|GO:0016829
Bhi11g00693 552 SUPERFAMILY Terpenoid synthases 225 550 IPR008949 -
Bhi11g00693 552 Coils Coil 30 50 - -
Bhi11g00693 552 CDD Terpene_cyclase_plant_C1 11 549 IPR044814 GO:0010333|GO:0016102
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00693 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K23172 csv:101211697 871.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00390 Bhi-Chr11:9216803 Bhi11g00693 Bhi-Chr11:17873970 8.31E-92 dispersed
Bhi11g00693 Bhi-Chr11:17873970 Bhi11g00695 Bhi-Chr11:18047713 7.75E-166 dispersed
Bhi11g00692 Bhi-Chr11:17805109 Bhi11g00693 Bhi-Chr11:17873970 0 tandem
Bhi11g00693 Bhi-Chr11:17873970 Bhi11g00694 Bhi-Chr11:18047713 7.75E-166 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g399 Blo03g00605 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00587 Cam10g0572 Cec10g0605 Cco10g0581 Clacu10g0606 Cmu10g1418 Cre10g0819 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi11g00693 Tan01g1634 . . Hepe07g0540 Mch10g1151 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00693 Bhi_Chr11 FPKM 12.768824 14.518049 12.537394 12.727284 15.061927 14.738225 16.100992 14.73636 13.025134 15.375638