Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00695 CTAACGCTAATTCCAACGCCAAAAGAATACGATTAAAAAAAAAGACCATTTTTTTTTTTTTAATAAAAACATGTGTTCGAAAGTATCAGCTGTTCCTAGCTATTCGGAGGTGGCTCGAAGGTCTGCCCAATTTCAAGCTAGCGTTTGGGGAGATTACTTTCTTTCCTACCATTCTCTTCCTCGGGAAGAAGGCAACCAGTTGATGGAGAAACAGATGGAAGAATTGAAAGAAGAAATAAAATGTCAATTAATTTTTGCAACAAAAGATAAGACTGAGAAACTGAGACTCATTGATTCAATCCAACGCTTAGGCGTTTCTTACCATTTCGAAAATGAAATCCACAAAATACTTCAACAACTCCATCATATTGCTATAACTGCCAACAATGATGATGATGATCTTCACACTATCACTCTCAGTTTCAGACTTCTCAGACAACAAGGATACAACATATCATCTCAGCTGTTCGATAAGTTTCGAGGCAAATGGGAAAGTTCATACGATAACAATGTGGAAGAACTCTTGAGTTTGTACGAAGCATCGCAATTGAGGATGCGAGGAGAGGAAGCATTGGACGAAGCGTTTCGTTTCGCTAACGCTCGGCTAGAAGCCATAGTCAGCGACTCGGCCACCGAACCAATGGTTGCAGCGGAGGTTCGCCGCGCTTTGAAGTGGCCGCTGTACAAGAACTTGCCGAGGCTTGAAGCTAGACACTACATTGGTTTGTACAGCGAGAAGCCATGGAAAAATGAGGGTTTGCTTAACTTTGCAAAGATGGATTTCAACCAATTGCAAAAGCTTCATCAGAAAGAGATTGCTTACATCTCAGAGTGGTGGGAAGATTATGGTTTTGCAGAAAAGCTATCATTTGCAAGGAACAGAATAGTGGAGGGATACTTTTTTGCTCTTGGGATATTCTTTGAACCCCAATTTTTAAGTGCTAGACTTATTATGACCAAAATCATTGCTATTGGGTCAATGTTAGATGACATTTATGATGTTTATGGCACATTTGAAGAACTCGAACTCTTGACCCATGCACTTGAGAGATGGGAAAAGAGTGAGACAGAGCAGCTCCCAAATTATTTGAAGATGTATTACGATGCTTTGCTAGATGTTTTTGATAAAATTGAACATGAAATGAGCAATCAAGAAACAACAACATATTGCATCCATCACATGAAAGAAGCGACAAAAGAGCTTGGAAGGGTGTTTTTGGTAGAGGCAAACTGGTGCAAGGAAGGATACACACCAACTGTGGAAGAATACTTAGATATTGCTTTAATATCTTTTGGCCACAAATTGCTTATGGTAACAGCTCTCTTGGGAATGGGAGATTTGGGCACACAACAAGCTGTTCAATGGGTCACCTCCATGCCTAATATTCTCAAAGCTTCCACTGTTATTTGTCGATTCATGAACGACATGGTTTCGCATAAGTTTGAACAAGAACGAGGTCATGTGGCTTCTGCCATTGAATGCTACATGGAACAGAATAGTGCATCGGAATACGATGCCATAAATGCATTACACAAACAAATAGATGATTCTTGGAAGGATATAGTCGAGAATTATTGTGTTGTCACCACAAATGATGAGGTCCCAAGGGCTGTTCTTAGGAGAGTTTTGAACCTCACAAGACTATTTAATGTGATATACAAAGATGGAGATGGCTATACACAATCTCAAGGCTCCACAAAAGCTTATATCAAGTCTTTGCTTGTCGACTCTGTCCCACTCTAGGGCTTTTCAATTCAAAAGCTGTCTCATAAACATAAAAATGATACTTTTATATATTTTTATGATATATAATATATATATATTGTTTAA 1831 39.0 MCSKVSAVPSYSEVARRSAQFQASVWGDYFLSYHSLPREEGNQLMEKQMEELKEEIKCQLIFATKDKTEKLRLIDSIQRLGVSYHFENEIHKILQQLHHIAITANNDDDDLHTITLSFRLLRQQGYNISSQLFDKFRGKWESSYDNNVEELLSLYEASQLRMRGEEALDEAFRFANARLEAIVSDSATEPMVAAEVRRALKWPLYKNLPRLEARHYIGLYSEKPWKNEGLLNFAKMDFNQLQKLHQKEIAYISEWWEDYGFAEKLSFARNRIVEGYFFALGIFFEPQFLSARLIMTKIIAIGSMLDDIYDVYGTFEELELLTHALERWEKSETEQLPNYLKMYYDALLDVFDKIEHEMSNQETTTYCIHHMKEATKELGRVFLVEANWCKEGYTPTVEEYLDIALISFGHKLLMVTALLGMGDLGTQQAVQWVTSMPNILKASTVICRFMNDMVSHKFEQERGHVASAIECYMEQNSASEYDAINALHKQIDDSWKDIVENYCVVTTNDEVPRAVLRRVLNLTRLFNVIYKDGDGYTQSQGSTKAYIKSLLVDSVPL 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18047713 18052120 - XM_039047368.1 Bhi11g00695 49407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00695 557 SUPERFAMILY Terpenoid synthases 227 557 IPR008949 -
Bhi11g00695 557 PANTHER ALPHA-HUMULENE/(-)-(E)-BETA-CARYOPHYLLENE SYNTHASE 3 557 - -
Bhi11g00695 557 Gene3D - 65 226 IPR036965 GO:0010333|GO:0016829
Bhi11g00695 557 SFLD Isoprenoid Synthase Type I 226 555 - -
Bhi11g00695 557 Pfam Terpene synthase family, metal binding domain 231 497 IPR005630 GO:0000287|GO:0010333|GO:0016829
Bhi11g00695 557 PANTHER OS04G0344100 PROTEIN-RELATED 3 557 - -
Bhi11g00695 557 CDD Terpene_cyclase_plant_C1 16 553 IPR044814 GO:0010333|GO:0016102
Bhi11g00695 557 SFLD Terpene Cyclase Like 1 C Terminal Domain 226 555 IPR034741 -
Bhi11g00695 557 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 23 223 IPR008930 -
Bhi11g00695 557 Pfam Terpene synthase, N-terminal domain 26 200 IPR001906 GO:0010333|GO:0016829
Bhi11g00695 557 Gene3D Farnesyl Diphosphate Synthase 24 545 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00695 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K23172 csv:101211540 919.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00693 Bhi-Chr11:17873970 Bhi11g00695 Bhi-Chr11:18047713 7.75E-166 dispersed
Bhi11g00695 Bhi-Chr11:18047713 Bhi10g02355 Bhi-Chr10:61715770 5.71E-105 dispersed
Bhi11g00694 Bhi-Chr11:18047713 Bhi11g00695 Bhi-Chr11:18047713 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g396 . . . . . . . . Cmo16g00930 . . . . . . . . . . . . . . . Cla10g00589 Cam10g0577 Cec10g0608 Cco10g0584 Clacu10g0608 Cmu10g1421 Cre10g0823 . . . . . Csa03g00578 . Cme06g02696 . . . . . . . . . . . . . . . . . Bhi11g00695 Tan01g1629 . . Hepe07g1115 . . . . . . . . . Lsi05g00662 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013849 0 2 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 2 3 1 1 2 1 0 2 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00695 Bhi_Chr11 FPKM 1.21091 1.251612 1.227331 1.221749 2.859693 2.170482 1.799274 0.601613 0.673673 0.756478