Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00836 GAAGCCTTCTTCTTCCTTCCTTCCTTGCTTCCATCCTTTTGCATCGCAATCGCAGAAACCCCAAAAATGGAGTTGGAGGATCACGAAGAAGACGACATGGAAATAGTAGAACCACCATCAAACTACATCGACAAAATCCACCCACTTTCCCGGTTCACCAAAAACCCATCTCCGGTCCACTCGAACCGCCCTCACCTTCCCTCCAACTCCAACCCCATCCTCTACAACTACAACTACAAAGAGTGCTTAAAAAACCACGCCGTCGCAGTCGGCGGCCACGCCCTCGACGGGTGCTGCGAGTTCATGCCCGCTGGACCCCATGGCTCTCTCGACGCCCTCAAATGCGCTGCGTGTAACTGCCACCGCAACTTCCACCGCAGAGACATCACCGACGACGGAGAATCGGGGCCGCAGTACATTTCGTACTGGCGTGGTCCGAGGATGCTGGCGCTGCCTTCGTCGTCGCCGGGACGGAAGCGGGTGAGGACAAAGTTCACGGAGGAGCAGAAGGAGAAGATGGTGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGAAGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAAGCGGCGGGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAAGGAATCCAAACATAACTAATTTCCCTAACCAACTCACTTTTCATAACCTTTTTAATTTGTATCCTCATTTTCCATGATCATCCTGCTTTAAACTTTGGTTAATCAATTAACTAAGCCTAAATTGCAAAAAAATGCAAAATCGAAAAATATCTCTACTCTACTCTGTCAAAAGTTGCATTATTATCTTTCATCTTTCGTAAGTATTTCAAAATCATCTTAATTTTAAAAATTAAGACCGGATAGTGATTCAGAGTATTTGACTTTGTTCAAATCCTTGTTTTTATTTTATCATTCAATGTCAGGTCTCGATTTTCATTTAATGCTCTAAAGTATGTATGAGATAACAATGTATAGAGTAATTTTCGCTTGCGGTTAAT 1033 45.21 MELEDHEEDDMEIVEPPSNYIDKIHPLSRFTKNPSPVHSNRPHLPSNSNPILYNYNYKECLKNHAVAVGGHALDGCCEFMPAGPHGSLDALKCAACNCHRNFHRRDITDDGESGPQYISYWRGPRMLALPSSSPGRKRVRTKFTEEQKEKMVEMAEKMEWRIQKKDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRKESKHN 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23129785 23130817 - XM_039050047.1 Bhi11g00836 49548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00836 202 Gene3D - 128 197 - -
Bhi11g00836 202 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 106 IPR006456 -
Bhi11g00836 202 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 136 193 IPR006455 -
Bhi11g00836 202 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 122 - -
Bhi11g00836 202 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 131 197 - -
Bhi11g00836 202 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 45 122 - -
Bhi11g00836 202 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 131 197 - -
Bhi11g00836 202 SUPERFAMILY Homeodomain-like 128 197 IPR009057 -
Bhi11g00836 202 Pfam ZF-HD protein dimerisation region 55 107 IPR006456 -
Bhi11g00836 202 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 56 106 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00836 - - - cpep:111809080 263.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g00400 Bhi-Chr6:8781289 Bhi11g00836 Bhi-Chr11:23129785 7.69E-45 dispersed
Bhi08g01318 Bhi-Chr8:40054411 Bhi11g00836 Bhi-Chr11:23129785 1.89E-38 dispersed
Bhi11g00836 Bhi-Chr11:23129785 Bhi11g03003 Bhi-Chr11:81564559 1.27E-15 dispersed
Bhi11g00836 Bhi-Chr11:23129785 Bhi04g00810 Bhi-Chr4:20322896 1.92E-52 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00810 . 53 246 ZF-HD Transcription Factor Family AT5G65410 51.5 2.3e-45 180.3
Bhi04g00810 . 22 242 ZF-HD Transcription Factor Family AT4G24660 52.7 2.7e-52 203.0
Bhi11g00836 . 57 194 ZF-HD Transcription Factor Family AT4G24660 52.7 1.1e-42 171.0
Bhi03g01303 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi03g01302 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi11g03003 . 12 298 ZF-HD Transcription Factor Family AT5G15210 50.5 2.5e-49 193.4
Bhi06g00400 . 1 252 ZF-HD Transcription Factor Family AT5G15210 51.2 3.3e-49 193.0
Bhi06g00400 . 17 254 ZF-HD Transcription Factor Family AT3G28920 59.3 3.4e-58 223.0
Bhi11g03003 . 22 283 ZF-HD Transcription Factor Family AT3G28920 60.7 9.9e-58 221.5
Bhi06g00400 . 25 258 ZF-HD Transcription Factor Family AT5G39760 55.4 7.4e-51 198.7
Bhi11g03003 . 30 273 ZF-HD Transcription Factor Family AT5G39760 55.7 2.9e-47 186.8
Bhi04g00810 . 22 242 ZF-HD Transcription Factor Family AT4G24660 52.7 2.7e-52 203.0
Bhi11g00836 . 57 194 ZF-HD Transcription Factor Family AT4G24660 52.7 1.1e-42 171.0
Bhi06g00400 . 25 258 ZF-HD Transcription Factor Family AT5G39760 55.4 7.4e-51 198.7
Bhi11g03003 . 30 273 ZF-HD Transcription Factor Family AT5G39760 55.7 2.9e-47 186.8
Bhi03g01303 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi03g01302 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi04g00810 . 53 246 ZF-HD Transcription Factor Family AT5G65410 51.5 2.3e-45 180.3
Bhi11g03003 . 12 298 ZF-HD Transcription Factor Family AT5G15210 50.5 2.5e-49 193.4
Bhi06g00400 . 1 252 ZF-HD Transcription Factor Family AT5G15210 51.2 3.3e-49 193.0
Bhi06g00400 . 17 254 ZF-HD Transcription Factor Family AT3G28920 59.3 3.4e-58 223.0
Bhi11g03003 . 22 283 ZF-HD Transcription Factor Family AT3G28920 60.7 9.9e-58 221.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2343 PF04770 ZF-HD_dimer 1.40E-27 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00836 Bhi_Chr11 FPKM 2.796906 2.556137 1.050663 0.664639 7.457882 8.040262 7.302368 0.355914 0.513714 0.567136