Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00901 GTTCTTTTCATTTCCTTGCTTTCTCTATACGCATGAACGTCTAAAAGAACAGGAAAAACAGAGCCGGTGACCTCGATTGGAAGCTGTAGAACTTTGGCCACCAACAAAATTTGATTCCCATTTGATTTTCAGCTATCATTGAGCTGCATAGGAGTCTCATTGTCCAAGTTCCATCTTGCCAGCATTTATTTAGTCTTAGCAATGGTTCTTGTTGGTTCTTTGCAACTGTCCTATCATCTGGGACTGCGGAGAAACTATTTGCATGAAGAAAATCTTAAGTTTACCTCTCAGAGCTATAGCACACGGCTATTGAATGTAGCCAGTCCATCTCTTTTTTTTCAGAAGAACACTTGGAGCACTCATTTATTTAGCATGAAATACCCACCTAATTACATTGTGCCTTCTAGATACAATGTACTCAGGTGCCAGTCGTCATTGATGACAAATCAACCACTGGATCCCCCTGGAATGAAGGCTGCTATAGTGGCATTGACAAAGTTTTGTAATGTATTAGGTGGTTGTCCTCCTTCAGTGGTTAAGTTAGTTCCTGCAGTTTGTATTATGGTGTTTGCTGTATGGGGTCTTGGACCATTTTTACGTTATACGAGAAGCCTATTCCATAATGATATTAACTGGAAGAAAAGTCGGACGTATAATATCATGACATTGTATCTTCAACCATTATTGCTGTGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAATTTTGTTAGGTCGTTGTCCACCGTGCTGGCCTTTGCATATTGCTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGAATCCAGTGACGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCAGTATGGGTTGCGGCTCTCTCATTGTTCATGGAGCTCTTGGGCTTTTCTACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTTTTGCTGACCTTAGCTGGCCGTGAGATTTTCACCAACTTTCTCTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACAAAAATCGAGGGCTATGAAGTTTCTGGCACTGTTGAGCATGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATAAGTTTACCATGAATGTCGTCAGAAATCTCAGTCAAAAAACTCATTGGCGGATTAAAACCCATCTTGCCATTAGCCATTTGGACGTCAATAAAATCAACAACATTGTCGCAGACATGCGGAAAGTCTTGGCAAAGAACCCTCAAGTTGAACAACAGAAATTGCATAGAAGAGTATTTTTGGAAAATGTGGATCCTGAAAATCAGGCACTTCTGATTTTGATATCTTGTTTTGTCAAGACTTCGCATTTTGAAGAATACCTTTGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGACATCACCGGGCTCGACTTGCAACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACATGGAAAGCGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGTGACTTCGAATCGCCGCATGTTGATGATCGAGCCCCCTTACAAAGTTTATGGAGAAGATAGAAAGCAAAGCCATAGCAGGACATCACGCACAACTGGAGAACAAAATGGTAAGCCCATTTCACGGTCATCGGGTGACAGCAAGGCAGTTAAAGAGACGTCATCTGATAAAAAGACGGAAGTTAAGACTGGAGGAGATGTTGATACAAAAAAGCAGCCCAAAGTTTCAATGTCGACCTCTGAAGATAAATCAAGCAATGAATTGAAACATAAATCGTCATCAAGGTCTGCTGCAAGTATCTCTGACATGCCAACTTCTGATGCCAAAACAACTAAATCAGATGCTGATAATTCGATGGAAGATTCCATTCCCAAGCAATCCGAAAATAGCTCAGGAAGTAACAGGCAGAACTTGAAGCCTTCCCTTCCTGCTGTTTCCTTTCCAGAAGATGTTAAGAAATCAGGAGAAACTACTTCAGCAGCTTCACAGCCAAGGATAGAAGGCGAGCAGACTACAGTTTCAAATCAATCAATAACAAAGCCTGGCGTAGAAGAGAATATAATCCTTGGTGTTGCTTTGGATGGCTCTAAGAGAACACTTCCTATTGAGGACGACTTACCTACTGCATCAGGAGCAAAAGATTTGGCTGCATGCAGGAATGGGAACAGTGCGAATGGAGCAACAACGCCAGATAAGAATACGAAACGTCAATCTCCTTCTCCTACCACATCTTCTAGTGAGTAGTAAGACTATGGTTTCATGCAGGGGATCCAGATTATTTGGTAAACAACTTTTTTGACAGAGAAGTTTGCATTGAGGTCCTATGAAGCTGCGTTTTCTCAGCGCTTGCAACAAATTATTCTCACCTGACTACAGTTTGCAATGGGGCAGGAATGTACATTTGTGCCATTTTGACTCTTGTTTCAGTGAATTCTGAAACAGCAAGCTGTTTACTTTGAGGATCAGCGGCCGTTAATGACAACACATCCTTTCAATTGGTAACATTTTCTTGATATAGAGCTTACGTTTTGTACATAAAACCTGTATCTTGAACTATAAATTATGTATACTAACAAAGAATATGCTAGATTGAATCAATGCATTTTGTAGAAGGATCTCAATTGTCTTCAAGAGAATACTGGGAATTTCGCATATAATGAACAAAATGCTCAGTTTGTAGTTCTGTTACAAGATTTTGAGGAAAATGAAAGCCGTTCGGCTCAGACATTTCTTTTTCCGA 2875 40.83 MVLVGSLQLSYHLGLRRNYLHEENLKFTSQSYSTRLLNVASPSLFFQKNTWSTHLFSMKYPPNYIVPSRYNVLRCQSSLMTNQPLDPPGMKAAIVALTKFCNVLGGCPPSVVKLVPAVCIMVFAVWGLGPFLRYTRSLFHNDINWKKSRTYNIMTLYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSESTESSDARNMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTMNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVDPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTMQKMHSDSDMESVPFSDSIFGHRGVTSNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKPISRSSGDSKAVKETSSDKKTEVKTGGDVDTKKQPKVSMSTSEDKSSNELKHKSSSRSAASISDMPTSDAKTTKSDADNSMEDSIPKQSENSSGSNRQNLKPSLPAVSFPEDVKKSGETTSAASQPRIEGEQTTVSNQSITKPGVEENIILGVALDGSKRTLPIEDDLPTASGAKDLAACRNGNSANGATTPDKNTKRQSPSPTTSSSE 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27799189 27808150 + XM_039049298.1 Bhi11g00901 49613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00901 725 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 716 - -
Bhi11g00901 725 MobiDBLite consensus disorder prediction 507 526 - -
Bhi11g00901 725 MobiDBLite consensus disorder prediction 493 725 - -
Bhi11g00901 725 MobiDBLite consensus disorder prediction 630 660 - -
Bhi11g00901 725 MobiDBLite consensus disorder prediction 600 619 - -
Bhi11g00901 725 MobiDBLite consensus disorder prediction 699 725 - -
Bhi11g00901 725 Pfam Mechanosensitive ion channel 239 445 IPR006685 GO:0016020|GO:0055085
Bhi11g00901 725 Gene3D - 192 295 - -
Bhi11g00901 725 MobiDBLite consensus disorder prediction 527 547 - -
Bhi11g00901 725 MobiDBLite consensus disorder prediction 569 590 - -
Bhi11g00901 725 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 716 IPR045042 -
Bhi11g00901 725 Gene3D - 297 352 IPR023408 -
Bhi11g00901 725 SUPERFAMILY Sm-like ribonucleoproteins 281 351 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00901 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101217250 1244.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00901 Bhi-Chr11:27799189 Bhi11g00903 Bhi-Chr11:27799332 0 dispersed
Bhi11g00900 Bhi-Chr11:27799182 Bhi11g00901 Bhi-Chr11:27799189 0 tandem
Bhi11g00901 Bhi-Chr11:27799189 Bhi11g00902 Bhi-Chr11:27799324 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00939 . 10 693 Mechanosensitive Ion Channel Family AT5G10490 56.5 2.6e-196 682.9
Bhi11g00900 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00903 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00902 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00901 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00904 . 1 604 Mechanosensitive Ion Channel Family AT5G10490 60.8 1.7e-187 653.7
Bhi04g00939 . 10 673 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.8e-198 688.7
Bhi11g00900 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00903 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00902 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00901 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00904 . 1 570 Mechanosensitive Ion Channel Family AT1G58200 56.8 4.5e-164 575.9
Bhi10g01195 . 43 920 Mechanosensitive Ion Channel Family AT1G53470 55.9 8.2e-259 891.0
Bhi05g01668 . 91 959 Mechanosensitive Ion Channel Family AT1G53470 50.9 4.0e-237 818.9
Bhi10g01195 . 43 918 Mechanosensitive Ion Channel Family AT3G14810 53.6 1.4e-247 853.6
Bhi10g01195 . 43 920 Mechanosensitive Ion Channel Family AT1G78610 59.6 3.1e-279 958.7
Bhi05g01668 . 59 959 Mechanosensitive Ion Channel Family AT1G78610 55.3 1.1e-268 923.7
Bhi05g01669 . 59 726 Mechanosensitive Ion Channel Family AT1G78610 51.7 2.1e-171 600.5
Bhi10g01195 . 216 920 Mechanosensitive Ion Channel Family AT2G17000 61.4 5.5e-236 815.1
Bhi05g01668 . 273 957 Mechanosensitive Ion Channel Family AT2G17000 57.9 3.2e-220 762.7
Bhi05g01669 . 273 725 Mechanosensitive Ion Channel Family AT2G17000 59.7 2.4e-143 507.3
Bhi09g03087 . 65 720 Mechanosensitive Ion Channel Family AT5G19520 50.6 3.6e-175 612.8
Bhi09g03089 . 65 720 Mechanosensitive Ion Channel Family AT5G19520 50.6 3.6e-175 612.8
Bhi09g03088 . 65 718 Mechanosensitive Ion Channel Family AT5G19520 50.4 3.4e-173 606.3
Bhi02g01835 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 52.5 2.0e-194 676.8
Bhi09g03087 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.5 1.6e-186 650.6
Bhi09g03089 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.5 1.6e-186 650.6
Bhi09g03088 . 64 718 Mechanosensitive Ion Channel Family AT5G12080 54.2 5.5e-184 642.1
Bhi09g03090 . 79 725 Mechanosensitive Ion Channel Family AT5G12080 53.4 8.8e-182 634.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00901 Bhi_Chr11 FPKM 0.216443 0.838839 87.091469 85.854767 457.964386 442.506775 453.786652 39.811169 38.114124 41.632526