Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g01013 ACACAATAGACAAAGAAAAAACACAAAAGTTTGTAGCTGTTTAGGCATTGGAAGAGTTCAAAGACAGTTCTTCCTTTGTTTAAGAAAACCCTCTTTCCCTCCTTTCCTCCAAACCCTCAAACCCCCAAATTCAGTTTCTTCATCTTCATCCAGAACCCAATTCAGGATTCGCTTCTGTGAATCGCGAGCTTGTAGTTCGAAGGCACATGGGTACAAGAACACAGCAACCATGCCGAGAAGACGACGACGACGACCTCCCAAGTGGCCCTGGCGCCACCACAATTTCCGGTCAGTCTGTTTCAATGAGTGGCAGTGTGGGTTCTCCTTCTAGTCGCAGCGAGCAAACCATGGCAACGCCTGCCAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCAGGGTCGCAAGGACCCACTGCTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGCCTTCGCCAATTCAGCATGAAAGTTTGCGAGAAAGTGGAGAGTAAGGGAAGAACGACCTATAACGAGGTTGCAGATGAACTCGTTGCAGAATTTGCTGATCCTGGCAACAGTGTTGCATCGCCAGATCAGCAGCAACAGTACGATGAAAAAAATATCAGGCGAAGGGTATATGATGCCCTGAATGTCCTCATGGCAATGGATATTATATCAAAGGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGTACCAGCGTGAATGATATTGAAGAACTAAAGTCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGTTGGAGGAACAGTATGTAGGTCTTCAGAATCTAATACAGCGAAATGAACAGTTATTCAGTTCTGAGAATGCTCCCAGTGGTGGTGTGTCTTTGCCTTTCATCCTGGTGCAGACACGGCCTCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGCTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGACGACAACTATGTTCTGAAGGCAATGAAGTTTTGCGACAGACCACAGTGCGATAATACGGCACAAAATTTTACTCCTGATGGTGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCTCAGATCCCTCTTCCTTCAATGTCTAACACGCCGGTTAGAACTCCAACCTCCCCACCACTTCCTGGAATCATAAAAGCTCGCGTCAAGCACGAACATTAACGATTGGTTAGACCGAGCTTGAGTCTATGTGCATTAATCTCTGCATGATTGTATATTCTGCATGTTCTTACTGCTGTGGCCTTCTTCATTATTGCTGGATCATATAGAATGGTAGTTCACTGCATCAAACTTCATGCAATCAAATTCATTTAGCTTGGAACTGATTTAAGTCGTTGGCTGGCTTAGAGCTAATTCTTTGCTTCTGATGTTCTTTAACTTTTCTTTTTACTGTATCTGATTAGTCATATAATGTTCCTCTTCCTATTCCTCATCCTTCTTGTAGAAGTATAGATTTTAGATGTGTTGGATTGTGGAGGGTTGATTAAACTACAGATCATTACAGAATGAGTTAAACAATGCTGCGAATCTGTTTACCTTGTGTATAGAATTCTAGTTCAAATGGCAAATATTGTCTTATTATATTGTTTGAA 1684 43.47 MGTRTQQPCREDDDDDLPSGPGATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQGPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVASPDQQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKSERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFTPDGGEGSSMSGMYQPPQIPLPSMSNTPVRTPTSPPLPGIIKARVKHEH 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30257554 30262705 - XM_039048957.1 Bhi11g01013 49725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g01013 348 SUPERFAMILY Winged helix DNA-binding domain 95 177 IPR036390 -
Bhi11g01013 348 Pfam Transcription factor DP 184 291 IPR014889 -
Bhi11g01013 348 Gene3D - 88 181 IPR036388 -
Bhi11g01013 348 Coils Coil 192 226 - -
Bhi11g01013 348 PIRSF Txn_factor_DP 4 348 IPR015648 GO:0005667|GO:0051726
Bhi11g01013 348 Gene3D Transcription factor DP 182 304 IPR038168 -
Bhi11g01013 348 CDD DP_DD 181 284 IPR014889 -
Bhi11g01013 348 PANTHER TRANSCRIPTION FACTOR DP 24 348 IPR015648 GO:0005667|GO:0051726
Bhi11g01013 348 MobiDBLite consensus disorder prediction 22 60 - -
Bhi11g01013 348 MobiDBLite consensus disorder prediction 1 95 - -
Bhi11g01013 348 SMART E2F_TDP_2 92 176 IPR003316 GO:0005667|GO:0006355
Bhi11g01013 348 Pfam E2F/DP family winged-helix DNA-binding domain 95 176 IPR003316 GO:0005667|GO:0006355
Bhi11g01013 348 SMART DP_2 183 346 IPR014889 -
Bhi11g01013 348 SUPERFAMILY E2F-DP heterodimerization region 183 295 IPR037241 -
Bhi11g01013 348 PANTHER TRANSCRIPTION FACTOR DP 24 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g01013 K04683 TFDP1; transcription factor Dp-1 - csv:101216863 665.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g01013 Bhi-Chr11:30257554 Bhi11g01014 Bhi-Chr11:30257554 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01451 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.4 5.7e-106 382.1
Bhi08g01452 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 7.4e-106 381.7
Bhi08g01449 CCT 3 358 E2F-DP Transcription Factor Family AT3G48160 55.3 5.3e-96 349.0
Bhi08g01450 . 3 356 E2F-DP Transcription Factor Family AT3G48160 55.4 2.6e-95 346.7
Bhi11g01013 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-60 230.7
Bhi11g01014 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 9.9e-60 228.0
Bhi03g01786 . 11 454 E2F-DP Transcription Factor Family AT2G36010 55.0 1.3e-120 431.0
Bhi10g00181 . 21 445 E2F-DP Transcription Factor Family AT2G36010 55.2 7.0e-119 425.2
Bhi03g01787 . 11 453 E2F-DP Transcription Factor Family AT2G36010 54.7 1.2e-118 424.5
Bhi10g00182 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-118 423.7
Bhi10g00180 . 21 444 E2F-DP Transcription Factor Family AT2G36010 55.4 4.5e-118 422.5
Bhi10g00182 . 20 446 E2F-DP Transcription Factor Family AT5G22220 58.0 5.9e-115 412.1
Bhi10g00180 . 20 449 E2F-DP Transcription Factor Family AT5G22220 57.6 1.3e-114 411.0
Bhi10g00181 . 20 450 E2F-DP Transcription Factor Family AT5G22220 57.5 3.2e-113 406.4
Bhi03g01787 . 29 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-96 350.9
Bhi03g01786 . 29 461 E2F-DP Transcription Factor Family AT5G22220 50.1 1.8e-95 347.4
Bhi04g00158 . 151 404 E2F-DP Transcription Factor Family AT1G47870 54.3 2.1e-65 247.3
Bhi10g00182 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.6e-63 238.8
Bhi10g00181 . 139 419 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi10g00180 . 138 418 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi11g01013 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-60 230.7
Bhi11g01014 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 9.9e-60 228.0
Bhi10g00182 . 20 446 E2F-DP Transcription Factor Family AT5G22220 58.0 5.9e-115 412.1
Bhi10g00180 . 20 449 E2F-DP Transcription Factor Family AT5G22220 57.6 1.3e-114 411.0
Bhi10g00181 . 20 450 E2F-DP Transcription Factor Family AT5G22220 57.5 3.2e-113 406.4
Bhi03g01787 . 29 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-96 350.9
Bhi03g01786 . 29 461 E2F-DP Transcription Factor Family AT5G22220 50.1 1.8e-95 347.4
Bhi03g01786 . 11 454 E2F-DP Transcription Factor Family AT2G36010 55.0 1.3e-120 431.0
Bhi10g00181 . 21 445 E2F-DP Transcription Factor Family AT2G36010 55.2 7.0e-119 425.2
Bhi03g01787 . 11 453 E2F-DP Transcription Factor Family AT2G36010 54.7 1.2e-118 424.5
Bhi10g00182 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-118 423.7
Bhi10g00180 . 21 444 E2F-DP Transcription Factor Family AT2G36010 55.4 4.5e-118 422.5
Bhi04g00158 . 151 404 E2F-DP Transcription Factor Family AT1G47870 54.3 2.1e-65 247.3
Bhi10g00182 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.6e-63 238.8
Bhi10g00181 . 139 419 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi10g00180 . 138 418 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi08g01451 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.4 5.7e-106 382.1
Bhi08g01452 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 7.4e-106 381.7
Bhi08g01449 CCT 3 358 E2F-DP Transcription Factor Family AT3G48160 55.3 5.3e-96 349.0
Bhi08g01450 . 3 356 E2F-DP Transcription Factor Family AT3G48160 55.4 2.6e-95 346.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2352 PF08781 DP 4.30E-41 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g01013 Bhi_Chr11 FPKM 0.0 0.0 0.0 0.0 0.377618 0.512325 0.302608 0.145672 0.293817 0.556688