Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g01050 TTTTCTTTTTCTTTTTTTTTCTTTTTTTTGCCTCTTTTAGGTACATCACCCATTTCAGAAATTTGCCTTAAAACCATTCTATTCCCTTTCCTTTGTCCAGAAAAGGAAACCCATTTTTTCTTTCTCTCTAAAAATCCATTGCAGTACCTATTTATTTTATTTTATTTTTTAAAATTCTTACAGCAGAAACCCAGAAGGACAACATAGAAATACACGAGGTGTGTAAAAGATTGATCTTGTAATTTTGGGAGAGAAAAAAAAGAAGAAGAATGACAAGGCAAAAAATTCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACATTTTCAAAGAGGAGAAGAGGGCTATTCAAAAAAGCTCATGAACTTGCAACTCTTTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGATTATTCTAGCTCAAGCATGTTGGAGTTACTAAGGAGACATAATATGCTACCCGAGCTGAATAACTTTAGCCAGCCTCCATCTCAGTTGGAAAAGAGTGCCTATGTTAAATTGACTGAGGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAAGGGAGAGGAGCTTCAAGGACTTGGAATAGAAGAATTAAAGCAACTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTAATAGAGACCAAGGATGAAAAGTTTCTTAAAGAGATTGGTGCTGTGAAGGAGAAGATTGAAACTTTGAATGGAGATCAGCAAGAACAGCAAGCAGTGGCTGTTGTTGGTGGAAATTCTTTGGGGTCAAAGTCAAACACTAGCAATAGCAGCTCCTCAACAAACCCTAATTCTCAAGATTATGATGACATTTCTCTTAAATTGGGTCTTTGAAGGCACAAAGTTATGCACTTCCTTGGAGCAAACTTGGCAATGCAAAACTCAGCCTTTTCTCTAATGGAAGCTTTACTAATCTCATGGACTGCCAAAGCACATTCCTATTTGCATAGAGAAATTAAAAGGATGTGAAAAAGGCATGCATTAACTTAATCACCATGTACTTATTTCAATCCTAATTCATTTAATTTCATATATATGACATGTTTTCAATGTCAAAAAAGAGTTATATACCATGAATATTTACTGTTTCTTTCTGCATATCAATTGATTAAGAGTTGATATATA 1172 34.81 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMLELLRRHNMLPELNNFSQPPSQLEKSAYVKLTEEFAAKTKELRHMKGEELQGLGIEELKQLEKLLEIGLNRVIETKDEKFLKEIGAVKEKIETLNGDQQEQQAVAVVGGNSLGSKSNTSNSSSSTNPNSQDYDDISLKLGL 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31041730 31050467 + XM_039049566.1 Bhi11g01050 49762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g01050 203 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi11g01050 203 Pfam K-box region 87 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi11g01050 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi11g01050 203 ProSiteProfiles K-box domain profile. 83 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi11g01050 203 MobiDBLite consensus disorder prediction 168 195 - -
Bhi11g01050 203 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 200 - -
Bhi11g01050 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi11g01050 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 200 - -
Bhi11g01050 203 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Bhi11g01050 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi11g01050 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi11g01050 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi11g01050 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi11g01050 203 MobiDBLite consensus disorder prediction 168 203 - -
Bhi11g01050 203 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Bhi11g01050 203 Gene3D - 15 107 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g01050 Bhi-Chr11:31041730 Bhi05g00942 Bhi-Chr5:33019057 3.92E-62 dispersed
Bhi11g01050 Bhi-Chr11:31041730 Bhi11g01051 Bhi-Chr11:31041734 7.10E-145 tandem
Bhi11g01050 Bhi-Chr11:31041730 Bhi05g00939 Bhi-Chr5:33019054 2.18E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2354 PF01486 K-box 1.20E-12 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g01050 - - csv:101223132 276.559