Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g01051 CTTTTTCTTTTTTTTTCTTTTTTTTGCCTCTTTTAGGTACATCACCCATTTCAGAAATTTGCCTTAAAACCATTCTATTCCCTTTCCTTTGTCCAGAAAAGGAAACCCATTTTTTCTTTCTCTCTAAAAATCCATTGCAGTACCTATTTATTTTATTTTATTTTTTAAAATTCTTACAGCAGAAACCCAGAAGGACAACATAGAAATACACGAGGTGTGTAAAAGATTGATCTTGTAATTTTGGGAGAGAAAAAAAAGAAGAAGAATGACAAGGCAAAAAATTCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACATTTTCAAAGAGGAGAAGAGGGCTATTCAAAAAAGCTCATGAACTTGCAACTCTTTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGATTATTCTAGCTCAAGCATGTTGGAGTTACTAAGGAGACATAATATGCTACCCGAGCTGAATAACTTTAGCCAGCCTCCATCTCAGTTGGAAAAGAGTGCCTATGTTAAATTGACTGAGGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAAGGGAGAGGAGCTTCAAGGACTTGGAATAGAAGAATTAAAGCAACTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTAATAGAGACCAAGGATGAAAAGTTTCTTAAAGAGATTGGTGCTGTGAAGGAGAAGGAAGCTTTACTAATGGAAGAGAATCAGAGACTGAGAAATAAAATTGAAACTTTGAATGGAGATCAGCAAGAACAGCAAGCAGTGGCTGTTGTTGGTGGAAATTCTTTGGGGTCAAAGTCAAACACTAGCAATAGCAGCTCCTCAACAAACCCTAATTCTCAAGATTATGATGACATTTCTCTTAAATTGGGTCTTTGAAGGCACAAAGTTATGCACTTCCTTGGAGCAAACTTGGCAATGCAAAACTCAGCCTTTTCTCTAATGGAAGCTTTACTAATCTCATGGACTGCCAAAGCACATTCCTATTTGCATAGAGAAATTAAAAGGATGTGAAAAAGGCATGCATTAACTTAATCACCATGTACTTATTTCAATCCTAATTCATTTAATTTCATATATATGACATGTTTTCAATGTCAAAAAAGAGTTATATACCATGAATATTTACTGTTTCTTTCTGCATATCAATTGATTAAGAGTTGATATATA 1210 34.88 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMLELLRRHNMLPELNNFSQPPSQLEKSAYVKLTEEFAAKTKELRHMKGEELQGLGIEELKQLEKLLEIGLNRVIETKDEKFLKEIGAVKEKEALLMEENQRLRNKIETLNGDQQEQQAVAVVGGNSLGSKSNTSNSSSSTNPNSQDYDDISLKLGL 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31041734 31050467 + XM_039049564.1 Bhi11g01051 49763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g01051 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi11g01051 217 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi11g01051 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi11g01051 217 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 215 - -
Bhi11g01051 217 Coils Coil 146 180 - -
Bhi11g01051 217 MobiDBLite consensus disorder prediction 185 217 - -
Bhi11g01051 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi11g01051 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi11g01051 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi11g01051 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi11g01051 217 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 215 - -
Bhi11g01051 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi11g01051 217 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Bhi11g01051 217 MobiDBLite consensus disorder prediction 185 209 - -
Bhi11g01051 217 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Bhi11g01051 217 Gene3D - 15 106 IPR036879 GO:0003677|GO:0046983
Bhi11g01051 217 Pfam K-box region 87 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g01051 Bhi-Chr11:31041734 Bhi03g01733 Bhi-Chr3:36537300 4.94E-70 dispersed
Bhi11g01050 Bhi-Chr11:31041730 Bhi11g01051 Bhi-Chr11:31041734 7.10E-145 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2355 PF01486 K-box 1.20E-16 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g01051 - - csv:101223132 305.834