Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g01091 ATGGCAGTTTTCTTGGCCAGTTTCATGTTCCTCTTCTTCCTAGCACATGCCCAAAACTCCCCTCAAGATTACATTGACCTACACAACAGTGCTCGGGCGCAGGTCGGTGTCGGTCCCATGACATGGAATGACACTGTTGCAGCCTACGCGCAAGCCTATGCCAACCAAAGGAGAAATGATTGCGCCTTGATCCACTCAAGCGGGCCATATGGCGAAAACATAGCCGTAGGCTACTACCCCGAATTCTCCGGGGCAGATGGCGTAAAGTTGTGGGTGGCAGAAAAACCTTTATACGACTATGAATCGAACTCGTGCAAAGGTGGCGAGTGTGGACACTACACTCAATTGGTGTGGCAAACCTCTGTGCATCTTGGATGTGCAAGAGTGGCCTGTAAGGGCAACTCCCAGTTCGTTGTATGCAACTACGATCCTCCTGGCAACTATATAGGATTAAGACCTTATGATTCTTCAATCTAA 477 49.27 MAVFLASFMFLFFLAHAQNSPQDYIDLHNSARAQVGVGPMTWNDTVAAYAQAYANQRRNDCALIHSSGPYGENIAVGYYPEFSGADGVKLWVAEKPLYDYESNSCKGGECGHYTQLVWQTSVHLGCARVACKGNSQFVVCNYDPPGNYIGLRPYDSSI 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32066887 32067363 + XM_039048386.1 Bhi11g01091 49803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g01091 158 ProSitePatterns CRISP family signature 1. 111 121 IPR018244 GO:0005576
Bhi11g01091 158 PANTHER PATHOGENESIS-RELATED PROTEIN 1 13 154 - -
Bhi11g01091 158 Pfam Cysteine-rich secretory protein family 26 142 IPR014044 -
Bhi11g01091 158 Gene3D CAP 14 158 IPR035940 -
Bhi11g01091 158 PRINTS Venom allergen 5 signature 40 58 IPR002413 -
Bhi11g01091 158 PRINTS Venom allergen 5 signature 85 100 IPR002413 -
Bhi11g01091 158 PRINTS Venom allergen 5 signature 109 128 IPR002413 -
Bhi11g01091 158 SMART SCP_3 19 150 IPR014044 -
Bhi11g01091 158 ProSitePatterns CRISP family signature 2. 137 148 IPR018244 GO:0005576
Bhi11g01091 158 PRINTS Allergen V5/Tpx-1 family signature 40 58 IPR001283 -
Bhi11g01091 158 PRINTS Allergen V5/Tpx-1 family signature 87 100 IPR001283 -
Bhi11g01091 158 PRINTS Allergen V5/Tpx-1 family signature 110 126 IPR001283 -
Bhi11g01091 158 PRINTS Allergen V5/Tpx-1 family signature 137 150 IPR001283 -
Bhi11g01091 158 CDD CAP_PR-1 21 154 - -
Bhi11g01091 158 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 13 154 IPR001283 -
Bhi11g01091 158 SUPERFAMILY PR-1-like 19 155 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g01091 K13449 PR1; pathogenesis-related protein 1 - csv:116402142 288.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g01091 Bhi-Chr11:32066887 Bhi05g01007 Bhi-Chr5:35690226 2.42E-47 dispersed
Bhi07g00092 Bhi-Chr7:5350856 Bhi11g01091 Bhi-Chr11:32066887 1.05E-78 transposed
Bhi11g01091 Bhi-Chr11:32066887 Bhi05g00999 Bhi-Chr5:35297752 1.40E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g802 . . Bda06g01145 . . . . . Cmo19g00540 . . . . . . Cpe04g00339 Cpe15g00419 . . . . . . . Cla02g00713 Cam02g0763 Cec02g0761 Cco02g0787 Clacu02g0754 Cmu02g0748 Cre02g1065 . . . . Lsi03g00627 Csa07g00657 . Cme01g00145 . . . . . . . . Sed07g1155 . . Cma11g01688 . . . . . Bhi11g01091 Tan01g0594 Cmetu07g1308 . . . . . . . . . . . Lsi03g00997 . Chy01g00154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001430 0 2 0 0 0 2 0 1 1 3 2 2 18 1 1 16 2 0 9 2 2 0 1 1 2 2 0 2 1 0 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g01091 Bhi_Chr11 FPKM 2.832209 4.150671 3.366235 4.546079 7.136209 6.54276 7.559646 3.860396 5.357698 4.668339