Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g01126 GAAGACCAAGACAACGATTCCGGCTGGCAGCTGAATCCGTGCCTGATAAAATTGGTTTTCCTGGAAAAATATTAAGGAGCCTCAGGAAAAATATATAAATGTATAAATCTCAACGAGCGATAGAGAGAATCAGTATTCAGAGAGGGCGAATTTTTCCACCTATGCTTCAATTTTCAACGGAATTTTGAATGTTCCAGCCTCCAAAAACCTAACTCATTCCACTATTCCCTTTGCATAACTGAGAAAAAAACTAGTTGGCCGTGGGAGTGAGCCTTCTTTCTGCTGCCTTTAATGGGTGCTCCGAAGCAGAAATGGACTAGTGAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAATGGAGGAATATGAGTGTCATGGCCAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTGGCTCTTAAGAGATTACATGCTCCTAAAAAGGATGAGAACACTGTGGCTCAAAGTGTTGCTGTCCAAAGTGAAGACGAATTGCCAGAAGCTAAGTCTGTTTCTCTTTCCTTGGATATCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAAAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCGATTACTTCCCTCAGGGAGCCTGGTGGTTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCTCCCGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTCGTAAACTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCAGCGGGGCCTTCAGAGAGGAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTACAAGAGCTGACAAGGATGAAATGTGTATTCTTTCGAAAGCTCAGATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGTAGCAATAGCGGAAGCCGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATTCGGGTTTGATGGAAAGCAAAAACTGATTTAGAAGAGTTATGGAGCTGTTCTTAAATGGATCAACGTGTTCCACGCTCACTATCGATTAGCATTATAAGCAACCTCTCCCCCACCATCTTCAATTGGTTTTTGGGCAACTCGAGGAACAGGGTCATATCTGACTAGAAGAAGAATAGGAAAATTCTGTGGGTTTATAGTTAGTTGTATGTAAAAATGTTCATTGCTTGTAGTGTAGGAAATATGTGGGCATTTTATCTATGCTCTCTGATGTTAATGAATTATTGCCATTGTTTATTTCTATTAGTCTGAAACTTTGGAGTTGTATTAATGTAAACAAGGAAAAAAGATAGAGAAATAGATGGGGTTTTGACAAAAAAAAAAAAAAAAAAGACCAAAGTTTCAAGGGGGGTCCCAATTTCATTTTAATTTCACGTTTTGGCAACCACAAA 1703 41.63 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAVQSEDELPEAKSVSLSLDIKQITGPKRSNVRKEEEEEEEEEEKEVERIERDARYDCHRLDNLIIEAITSLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPPAGPSERRSSMLLLDDQQRASTRADKDEMCILSKAQIDLELAKMRTMTSQEAAAAAARAVAEAEVAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32919601 32927793 + XM_039049922.1 Bhi11g01126 49838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g01126 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Bhi11g01126 323 MobiDBLite consensus disorder prediction 116 137 - -
Bhi11g01126 323 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 146 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bhi11g01126 323 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Bhi11g01126 323 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 320 - -
Bhi11g01126 323 Coils Coil 266 303 - -
Bhi11g01126 323 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Bhi11g01126 323 Coils Coil 118 142 - -
Bhi11g01126 323 Gene3D - 2 59 - -
Bhi11g01126 323 PANTHER SINGLE MYB HISTONE 4 1 320 IPR044597 GO:0003691
Bhi11g01126 323 SUPERFAMILY Winged helix DNA-binding domain 146 220 IPR036390 -
Bhi11g01126 323 Pfam linker histone H1 and H5 family 151 208 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bhi11g01126 323 Gene3D - 146 222 IPR036388 -
Bhi11g01126 323 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bhi11g01126 323 SMART sant 4 59 IPR001005 -
Bhi11g01126 323 SMART h15plus2 143 209 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bhi11g01126 323 CDD SANT_TRF 6 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g01126 K09422 MYBP; transcription factor MYB, plant - csv:101218411 477.633
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g01126 Bhi-Chr11:32919601 Bhi11g01128 Bhi-Chr11:32920314 0 dispersed
Bhi11g01125 Bhi-Chr11:32919601 Bhi11g01126 Bhi-Chr11:32919601 0 tandem
Bhi11g01126 Bhi-Chr11:32919601 Bhi11g01127 Bhi-Chr11:32919601 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g01127 . 1 295 Single Myb Histone (SMH) Gene Family AT1G49950 66.2 4.2e-82 302.4
Bhi11g01126 . 1 322 Single Myb Histone (SMH) Gene Family AT1G49950 60.8 1.1e-77 287.7
Bhi11g01125 . 1 326 Single Myb Histone (SMH) Gene Family AT1G49950 60.1 3.1e-77 286.2
Bhi11g01128 . 1 326 Single Myb Histone (SMH) Gene Family AT1G49950 60.1 3.1e-77 286.2
Bhi03g01051 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 53.8 4.4e-63 239.2
Bhi03g01052 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 53.8 4.4e-63 239.2
Bhi03g01051 . 1 246 Single Myb Histone (SMH) Gene Family AT5G67580 53.0 2.8e-65 246.5
Bhi03g01052 . 1 246 Single Myb Histone (SMH) Gene Family AT5G67580 53.0 2.8e-65 246.5
Bhi03g01051 . 1 246 Single Myb Histone (SMH) Gene Family AT3G49850 51.2 2.1e-57 220.3
Bhi03g01052 . 1 246 Single Myb Histone (SMH) Gene Family AT3G49850 51.2 2.1e-57 220.3
Bhi01g02738 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 52.0 2.0e-68 256.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2361 PF00538 Linker_histone 1.10E-07 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g01126 Bhi_Chr11 FPKM 35.28167 36.331696 18.955677 20.015617 10.519712 9.365331 10.036393 44.359383 42.688919 42.420975