Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g01127 GAAGACCAAGACAACGATTCCGGCTGGCAGCTGAATCCGTGCCTGATAAAATTGGTTTTCCTGGAAAAATATTAAGGAGCCTCAGGAAAAATATATAAATGTATAAATCTCAACGAGCGATAGAGAGAATCAGTATTCAGAGAGGGCGAATTTTTCCACCTATGCTTCAATTTTCAACGGAATTTTGAATGTTCCAGCCTCCAAAAACCTAACTCATTCCACTATTCCCTTTGCATAACTGAGAAAAAAACTAGTTGGCCGTGGGAGTGAGCCTTCTTTCTGCTGCCTTTAATGGGTGCTCCGAAGCAGAAATGGACTAGTGAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAATGGAGGAATATGAGTGTCATGGCCAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTGGCTCTTAAGAGATTACATGCTCCTAAAAAGGATGAGAACACTGTGGCTCAAAGTGTTGCTGTCCAAAGTGAAGACGAATTGCCAGAAGCTAAGTCTGTTTCTCTTTCCTTGGATATCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGGTTAGACAATCTTATAATTGAGGCGATTACTTCCCTCAGGGAGCCTGGTGGTTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCTCCCGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTCGTAAACTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCAGCGGGGCCTTCAGAGAGGAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTACAAGAGCTGACAAGGATGAAATGTGTATTCTTTCGAAAGCTCAGATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGTAGCAATAGCGGAAGCCGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATTCGGGTTTGATGGAAAGCAAAAACTGATTTAGAAGAGTTATGGAGCTGTTCTTAAATGGATCAACGTGTTCCACGCTCACTATCGATTAGCATTATAAGCAACCTCTCCCCCACCATCTTCAATTGGTTTTTGGGCAACTCGAGGAACAGGGTCATATCTGACTAGAAGAAGAATAGGAAAATTCTGTGGGTTTATAGTTAGTTGTATGTAAAAATGTTCATTGCTTGTAGTGTAGGAAATATGTGGGCATTTTATCTATGCTCTCTGATGTTAATGAATTATTGCCATTGTTTATTTCTATTAGTCTGAAACTTTGGAGTTGTATTAATGTAAACAAGGAAAAAAGATAGAGAAATAGATGGGGTTTTGACAAAAAAAAAAAAAAAAAAGACCAAAGTTTCAAGGGGGGTCCCAATTTCATTTTAATTTCACGTTTTGGCAACCACAAA 1622 41.99 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAVQSEDELPEAKSVSLSLDIKQITGPKRSNVRLDNLIIEAITSLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPPAGPSERRSSMLLLDDQQRASTRADKDEMCILSKAQIDLELAKMRTMTSQEAAAAAARAVAEAEVAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32919601 32927793 + XM_039049923.1 Bhi11g01127 49839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g01127 296 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 293 - -
Bhi11g01127 296 SUPERFAMILY Winged helix DNA-binding domain 117 193 IPR036390 -
Bhi11g01127 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Bhi11g01127 296 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bhi11g01127 296 PANTHER SINGLE MYB HISTONE 4 1 293 IPR044597 GO:0003691
Bhi11g01127 296 Coils Coil 239 276 - -
Bhi11g01127 296 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Bhi11g01127 296 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bhi11g01127 296 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bhi11g01127 296 SMART sant 4 59 IPR001005 -
Bhi11g01127 296 Gene3D - 2 59 - -
Bhi11g01127 296 Pfam linker histone H1 and H5 family 124 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bhi11g01127 296 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Bhi11g01127 296 CDD SANT_TRF 6 56 - -
Bhi11g01127 296 Gene3D - 116 195 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g01127 K09422 MYBP; transcription factor MYB, plant - csv:101218411 437.187
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02738 Bhi-Chr1:67414937 Bhi11g01127 Bhi-Chr11:32919601 2.44E-38 dispersed
Bhi03g01051 Bhi-Chr3:20905829 Bhi11g01127 Bhi-Chr11:32919601 1.72E-91 dispersed
Bhi03g01052 Bhi-Chr3:20905829 Bhi11g01127 Bhi-Chr11:32919601 1.57E-91 dispersed
Bhi11g01126 Bhi-Chr11:32919601 Bhi11g01127 Bhi-Chr11:32919601 0 tandem
Bhi11g01127 Bhi-Chr11:32919601 Bhi11g01128 Bhi-Chr11:32920314 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g01127 . 1 295 Single Myb Histone (SMH) Gene Family AT1G49950 66.2 4.2e-82 302.4
Bhi11g01126 . 1 322 Single Myb Histone (SMH) Gene Family AT1G49950 60.8 1.1e-77 287.7
Bhi11g01125 . 1 326 Single Myb Histone (SMH) Gene Family AT1G49950 60.1 3.1e-77 286.2
Bhi11g01128 . 1 326 Single Myb Histone (SMH) Gene Family AT1G49950 60.1 3.1e-77 286.2
Bhi03g01051 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 53.8 4.4e-63 239.2
Bhi03g01052 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 53.8 4.4e-63 239.2
Bhi03g01051 . 1 246 Single Myb Histone (SMH) Gene Family AT5G67580 53.0 2.8e-65 246.5
Bhi03g01052 . 1 246 Single Myb Histone (SMH) Gene Family AT5G67580 53.0 2.8e-65 246.5
Bhi03g01051 . 1 246 Single Myb Histone (SMH) Gene Family AT3G49850 51.2 2.1e-57 220.3
Bhi03g01052 . 1 246 Single Myb Histone (SMH) Gene Family AT3G49850 51.2 2.1e-57 220.3
Bhi01g02738 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 52.0 2.0e-68 256.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2362 PF00538 Linker_histone 9.80E-08 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g01127 Bhi_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.375114 0.274397 0.311764