Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g01309 CACCAAATTTTGTGTATTTTCTTTATATTTTTTCAATATTGTTCTCTCTCTATTGTTGTTTTGCCAATCTCTATGGGTGTTCCTTTACAATTACCAAACCTTTACCATCACTACTTCCACTCCCAACACCCAATACGAATCAAAGCCCACACGCTTTTACATTCATTCATTTCGTCATCGTCATCGCCTCTCCTCATCTTCCTCACTTTCCCCATCTCTCCGACGGATTACCGGCCGTTGATCTCTGTTGACTCTACTCGTTCAGTGTTTCCTAGCTGGGTTCCTGTGTTTTGGGCCCTTCAAGCTCTTGAACTCCTTCGTTTTTCATGATTTGGTGCGAATTCTTGTTATGGGTTTGTGGGTTGCTCTTAATTGGAATTGTGGATGCGTCGGTTTCTTGTTTCTGGACTTCTGGGGTTGGAGTGAAGCTGATTAGAACTCGTTAGGAATTTACTTGTTTTGGTTGAGGGGTTTTTCAGCTTTGATCTGTTGCTGGGATTTGGTTACCGTTTTGTGCTTAATTGTTTTCGTCTTCAGAGGGAGTTGAGTTGAATAATTGGATCTTCTCAGTCTCCTCTACTTTTTGAGAAATGGAGGCTGGATATGGAGGTGAAGCTTGTCAATTATACGGTATGGGTACTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCCAGGCCTTTAAATACGGTGGAATCTGATCATTTGAGCAGGCAGCTTTTTCCAATCGTCTCTGGGATTCCCCTAACGAATGGGGGTTCGTCGAATAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTAATAGAAGATGAGAATCTTAATGATGAAGCGCGTACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCCCAGATTGTTGAGAGAGAAGCAGGGAGTTGGGAAGGAACAAGTGGGAAGAAGACTAAATTGGCTGGGGGAAATTCAAATCGTGCAGTTTGCCAGGTCGAGGACTGCGGAGCAGATCTGAGTAACGCAAAAGATTATCACAGACGACATAAAGTCTGTGAAATGCATTCTAAGGCGAGTAATGCACTTGTTGCAAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGTAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGCTATTTACTGTTAACTCTATTGCGAATACTTGCAAACTTACACTCCAATGCATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGTCTTGCCTGCCAATCTAGTGAGCATGGGGGAAAAAACCTATCTGGGATTCTGCATGAACCCCAGAATTTGCTGAACAACGGGGCATTAATTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAGGTGCCTTTGAGATCTTCTAAACAACATGACACGATACCTATATCTGAGACACCAGTACAAGCCATTAGTAGGGGTGGTGATACACCAGCTATATCTTCTGTTAAACCAAGCACTTCGAACAGCCCTCCTGCTTATTCAGAAATCAGGGACAGTACAGCTGGACAGTGCAAGATGATGAACTTCGATCTGAATGATGCTTATGTTGACTCAGATGATGGCATGGAAGATATTGAGAGACAAACACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGCCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCCCCTCAAACCAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCCCAGAGCCGCACAGACCGCATCATTTTGAAATTGTTTGGGAAAGCACCAAATGATTTTCCTCATGTTTTGCGAACTCAGGTTCTCGATTGGTTATCACATAGTCCCACGGAAATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGGCAGACTGAAGCTGCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCCAATGATGCTTTCTGGAGAACTGGATGGGTTTATGTGCGGGTTCAGCACCAAATAGCTTTTGTTTATCATGGTCAGGTTGTAGTTGACACCTCCTTGCCTCTTAGAAACAAGAATTACTGTAGAATCACAAGTGTAAACCCAGTTGCCATTTCTACGTCTAAGAAGGCTATGTTTTCAGTTAAAGGAATAAACTTGACCCAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAACTCAGGAAGCTTCTGATGAGTCAACAGAAAGTGGTGATAACTTGAAGGCGCAAGATGACAGCCAATGTGTTACCTTTTCCTGCTCTATTCCTGTCGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGTTCCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTTCTGAGATCTGCACACTTCAGAGTGCATTGGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAACGCGATGGAATTTATTCATGAAATTGGTTGGCTGTTTCATAGAAATCAATTGAAGTCTAGATTAGGTCACTTGGATCCTAATGAAAGTCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGACGTTCTTCGAGATGGGACCGTGGATACTGGAGGTCATCCATCCTTGAATCTAGCATTGATGGAGATGGGTTTACTTCACCGAGCCGTGAGAAAAAACAGTAGATCACTGGTAGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATGCATCAAGTTCTGAAGAGAGTGCATCCGCTGATGGAGGGACCGATAGCTTCCTGTTTAGACCTAATGTTGTAGGCCCGGCTGGTTTGACACCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTCTTGATGCATTAACCAATGACCCGGGAATGGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCAACGCCAGAGGATTATGCCCGCTTACGTGGCCATTACTCGTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGGCATGTAGTGCTGGATATTCCTAGTTCTCTCTCAGATGGTAGCTGGAATCAAAAGCAAAACACTGATTTGACCACCTCCGGGTTTGAGATTGGCAGGACGGAACTAAAACCTAGTCATCAGCATTGCAGGCTTTGTGTCAGGAAACCGCTGGGTTGTGGAACATCGTCTAGCGCGTCACTGGTCTACAGGCCTGCAATGCTTTCAATGGTGGCCATTGCTGCTGTTTGTGTCTGCGTGGCACTCCTATTTAAAAGCTCGCCTGAGGTTCTTTATGTCTTCCGGCCCTTCCGATGGGAACTACTAGATTACGGTACTAGTTAGACCCATCTATAAATTATCTACCTGACTAAATTATAGGTAATGTATTTGTATGGAGTTATGAAGTTGAAATTCAGTAGAACTTGTAATGAGTTCCAGATTGATATACTCTATTCACGTGTTATCGAAATTCGCTATACTCGGCCATC 3781 43.77 MEAGYGGEACQLYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESDHLSRQLFPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVEREAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLLRILANLHSNASNQTTDQDLLSHLIRSLACQSSEHGGKNLSGILHEPQNLLNNGALIGKSDLVSTFLSNGPQVPLRSSKQHDTIPISETPVQAISRGGDTPAISSVKPSTSNSPPAYSEIRDSTAGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRTQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTEAAWDNLCHDLSTSFNRLLDVSNDAFWRTGWVYVRVQHQIAFVYHGQVVVDTSLPLRNKNYCRITSVNPVAISTSKKAMFSVKGINLTQPTTRLLCAIEGKYLTQEASDESTESGDNLKAQDDSQCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICTLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNESLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLRDGTVDTGGHPSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEESASADGGTDSFLFRPNVVGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDGSWNQKQNTDLTTSGFEIGRTELKPSHQHCRLCVRKPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38749388 38757179 + XM_039049738.1 Bhi11g01309 50021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g01309 1014 Gene3D - 755 910 IPR036770 -
Bhi11g01309 1014 MobiDBLite consensus disorder prediction 222 242 - -
Bhi11g01309 1014 SUPERFAMILY Ankyrin repeat 781 896 IPR036770 -
Bhi11g01309 1014 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Bhi11g01309 1014 MobiDBLite consensus disorder prediction 346 374 - -
Bhi11g01309 1014 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Bhi11g01309 1014 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1013 - -
Bhi11g01309 1014 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Bhi11g01309 1014 Pfam SBP domain 156 229 IPR004333 GO:0003677
Bhi11g01309 1014 MobiDBLite consensus disorder prediction 420 455 - -
Bhi11g01309 1014 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1013 IPR044817 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g01309 - - - csv:101203103 1899.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g01309 Bhi-Chr11:38749388 Bhi12g02132 Bhi-Chr12:66812565 2.74E-34 dispersed
Bhi11g01308 Bhi-Chr11:38749388 Bhi11g01309 Bhi-Chr11:38749388 0 tandem
Bhi11g01309 Bhi-Chr11:38749388 Bhi11g01310 Bhi-Chr11:38749388 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g01308 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01309 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01310 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01308 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi11g01309 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi11g01310 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi12g02448 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi12g02449 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi12g02447 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi01g02096 . 159 262 SBP-box Gene Family AT5G50570 64.4 2.5e-36 150.6
Bhi09g02766 . 1 1063 SBP-box Gene Family AT1G20980 50.1 1.1e-265 914.1
Bhi09g02766 . 1 725 SBP-box Gene Family AT1G76580 50.2 2.5e-170 596.7
Bhi11g01308 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01309 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01310 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01308 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi11g01309 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi11g01310 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi12g02448 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi12g02449 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi12g02447 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi01g02096 . 159 262 SBP-box Gene Family AT5G50570 64.4 2.5e-36 150.6
Bhi12g02448 . 15 163 SBP-box Gene Family AT5G50670 55.3 2.8e-40 163.7
Bhi12g02449 . 15 163 SBP-box Gene Family AT5G50670 55.3 2.8e-40 163.7
Bhi12g02447 . 15 163 SBP-box Gene Family AT5G50670 55.3 2.8e-40 163.7
Bhi01g02096 . 159 262 SBP-box Gene Family AT5G50670 64.4 2.5e-36 150.6
Bhi09g02766 . 1 1063 SBP-box Gene Family AT1G20980 50.1 1.1e-265 914.1
Bhi09g02766 . 1 725 SBP-box Gene Family AT1G76580 50.2 2.5e-170 596.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2376 PF03110 SBP 7.90E-30 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g01309 Bhi_Chr11 FPKM 21.990961 26.51836 17.048798 20.774431 23.390001 21.216301 22.591185 13.410973 12.68055 15.288412