Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bhi11g01354 | TCCCTCCTTTATCTTCTCTTCTCTAAATTTGGTAATCTTTTACCCTCTTTCCAAGTTTATCACAGGCCCCAAAATGGGCAAATATTGAACCTGGAAAAAGGGGTGAGGGAAAAAAAGGTTGAGGGCTACAAAAACAAGGGGAATACGAAGAGGGGTTTTTCGTTTATTTGGGGTTTTTTTGAGGATTTCGATTGAAACCCGTAATTTTTGAGGGTTTTTATCAACTGGGTGTTTGTGATTTGGGATATTTTCAAATGGGTCGAGGGAAGATTGAAATCAAAAGGATTGAGAATGCTAATAGCAGGCAAGTTACATTCTCGAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAAGAGCTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTCGAGTTTTCTAGTTCTGGCATGAAGCATACTCTTGCAAGATACAACAAATGTGTAGAATCTTCAGAGACTACAGTAGACGTGCACAAGGTCGAGAAGCAAGAGCATGAGGAGGTAGACATTCTAAGAGACGAAATAACAACTCTTCAAATGAAACAATTACAGCTATTGGGAAAGGATCTCACCGGTTTAGGCTTCAAAGAGTTGCAGAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAGCAACTAGAGCAATCAAGGGAACAACGAGCAATGCTTGAGAACGAAACTCTGCGGAGACAGGTCAATGAGCTTCGGTGTCTGTTTCCGCCGGTTGATTGTCAGCTTCCTGCTTATCTTGAATACTGCTCTCTTGAACAGAAGAATATTGGCATTAGAAGCCCTGATATAGCCTGCAACTCCGAAATTGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGGGTGAGAGAGATACTCATTCAAATGATTCAGGGAGCCAAATGGGCCTACTATGATGTCTCTCTCTCTCTCATTCATTCTGATTAATTAGAATGGCGGCACAGACACTGACGAGACAAACCGGGATAATCAGTTTCATCTCCACCTTCAGAAACTGCAAATATTCATTAGGTGACTCTGAAACCATTGAAACAGAGAGAGTTAGAAATCCTCGTGTAGGAGAAGGAGATCAGTCATGAAAATGACATTGTTGCAGTTAGTTTTATTAGATTTTGGAGTCATTTGTTAAGAAGTTTGCAAACTCTAGCCCTTCACTTGTAGCTGCCTAAAGAAGGAATATTAGCTATTCTTTCTGGCTTATTTGTTAGCTGATCTGTAATTTTTCCTGCCTCACTTCTTCTGTGGCTGGATCAAATTTGGAATGCCAAGCTAAGGTTTCAATGTGTATTGAATTCTAAGGTGCTCTCTCTCTCTTGCTATCATCTCTATTTTCTTTTTCCAGTTTCCAGAAAAAAAGTGATCAATTGTAAACTTGTATTATTTATATTGCAGTTCAACAGTAAAGTTTATACATTATAACTCACAATCACAATTCAATATATAAAAAAAGTAGAAACAATCCAACCATGGCTATTGATTTCTCTGTCTTAGGCAATCAAGCAGTTTGCTTCTCTCTTCCAAAACGTCAGA | 1638 | 39.56 | MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLARYNKCVESSETTVDVHKVEKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSREQRAMLENETLRRQVNELRCLFPPVDCQLPAYLEYCSLEQKNIGIRSPDIACNSEIERGDSDTTLHLGLPSHVYCKRKEGERDTHSNDSGSQMGLL | 249 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 39870487 | 39875024 | + | XM_039049170.1 | Bhi11g01354 | 50066 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bhi11g01354 | 249 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bhi11g01354 | 249 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bhi11g01354 | 249 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bhi11g01354 | 249 | CDD | MADS_MEF2_like | 2 | 78 | IPR033896 | GO:0000977|GO:0045944 | |
Bhi11g01354 | 249 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bhi11g01354 | 249 | ProSiteProfiles | K-box domain profile. | 86 | 174 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bhi11g01354 | 249 | PANTHER | MADS BOX PROTEIN | 1 | 227 | - | - | |
Bhi11g01354 | 249 | SUPERFAMILY | SRF-like | 2 | 79 | IPR036879 | GO:0003677|GO:0046983 | |
Bhi11g01354 | 249 | Gene3D | - | 14 | 93 | IPR036879 | GO:0003677|GO:0046983 | |
Bhi11g01354 | 249 | Pfam | K-box region | 84 | 168 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bhi11g01354 | 249 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 | 1 | 227 | - | - | |
Bhi11g01354 | 249 | Coils | Coil | 123 | 174 | - | - | |
Bhi11g01354 | 249 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bhi11g01354 | 249 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bhi11g01354 | 249 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bhi11g01354 | Bhi-Chr11:39870487 | Bhi11g01357 | Bhi-Chr11:39870489 | 0 | dispersed | |
Bhi11g01354 | Bhi-Chr11:39870487 | Bhi11g01355 | Bhi-Chr11:39870487 | 0 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
2378 | PF01486 | K-box | 8.20E-16 | No_clan | Bhi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bhi11g01354 | - | - | csv:101218805 | 417.157 |