Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g01355 TCCCTCCTTTATCTTCTCTTCTCTAAATTTGGTAATCTTTTACCCTCTTTCCAAGTTTATCACAGGCCCCAAAATGGGCAAATATTGAACCTGGAAAAAGGGGTGAGGGAAAAAAAGGTTGAGGGCTACAAAAACAAGGGGAATACGAAGAGGGGTTTTTCGTTTATTTGGGGTTTTTTTGAGGATTTCGATTGAAACCCGTAATTTTTGAGGGTTTTTATCAACTGGGTGTTTGTGATTTGGGATATTTTCAAATGGGTCGAGGGAAGATTGAAATCAAAAGGATTGAGAATGCTAATAGCAGGCAAGTTACATTCTCGAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAAGAGCTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTCGAGTTTTCTAGTTCTGGCATGAAGCATACTCTTGCAAGATACAACAAATGTGTAGAATCTTCAGAGACTACAGTAGACGTGCACAAGGTCGAGAAGCAAGAGCATGAGGAGGTAGACATTCTAAGAGACGAAATAACAACTCTTCAAATGAAACAATTACAGCTATTGGGAAAGGATCTCACCGGTTTAGGCTTCAAAGAGTTGCAGAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGTTACTGATGGAGCAACTAGAGCAATCAAGGGAACAACGAGCAATGCTTGAGAACGAAACTCTGCGGAGACAGGTCAATGAGCTTCGGTGTCTGTTTCCGCCGGTTGATTGTCAGCTTCCTGCTTATCTTGAATACTGCTCTCTTGAACAGAAGAATATTGGCATTAGAAGCCCTGATATAGCCTGCAACTCCGAAATTGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGGGTGAGAGAGATACTCATTCAAATGATTCAGGGAGCCAAATGGGCCTACTATGATGTCTCTCTCTCTCTCATTCATTCTGATTAATTAGAATGGCGGCACAGACACTGACGAGACAAACCGGGATAATCAGTTTCATCTCCACCTTCAGAAACTGCAAATATTCATTAGGTGACTCTGAAACCATTGAAACAGAGAGAGTTAGAAATCCTCGTGTAGGAGAAGGAGATCAGTCATGAAAATGACATTGTTGCAGTTAGTTTTATTAGATTTTGGAGTCATTTGTTAAGAAGTTTGCAAACTCTAGCCCTTCACTTGTAGCTGCCTAAAGAAGGAATATTAGCTATTCTTTCTGGCTTATTTGTTAGCTGATCTGTAATTTTTCCTGCCTCACTTCTTCTGTGGCTGGATCAAATTTGGAATGCCAAGCTAAGGTTTCAATGTGTATTGAATTCTAAGGTGCTCTCTCTCTCTTGCTATCATCTCTATTTTCTTTTTCCAGTTTCCAGAAAAAAAGTGATCAATTGTAAACTTGTATTATTTATATTGCAGTTCAACAGTAAAGTTTATACATTATAACTCACAATCACAATTCAATATATAAAAAAAGTAGAAACAATCCAACCATGGCTATTGATTTCTCTGTCTTAGGCAATCAAGCAGTTTGCTTCTCTCTTCCAAAACGTCAGA 1632 39.52 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLARYNKCVESSETTVDVHKVEKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKLLMEQLEQSREQRAMLENETLRRQVNELRCLFPPVDCQLPAYLEYCSLEQKNIGIRSPDIACNSEIERGDSDTTLHLGLPSHVYCKRKEGERDTHSNDSGSQMGLL 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39870487 39875024 + XM_039049171.1 Bhi11g01355 50067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g01355 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi11g01355 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi11g01355 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi11g01355 247 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bhi11g01355 247 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Bhi11g01355 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi11g01355 247 Pfam K-box region 84 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi11g01355 247 ProSiteProfiles K-box domain profile. 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi11g01355 247 PANTHER MADS BOX PROTEIN 1 225 - -
Bhi11g01355 247 Coils Coil 140 172 - -
Bhi11g01355 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi11g01355 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi11g01355 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi11g01355 247 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Bhi11g01355 247 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g01355 Bhi-Chr11:39870487 Bhi11g01357 Bhi-Chr11:39870489 7.23E-180 dispersed
Bhi11g01354 Bhi-Chr11:39870487 Bhi11g01355 Bhi-Chr11:39870487 0 tandem
Bhi11g01355 Bhi-Chr11:39870487 Bhi11g01356 Bhi-Chr11:39870488 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2379 PF01486 K-box 3.10E-12 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g01355 - - csv:101218805 437.573