Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g01357 CCTCCTTTATCTTCTCTTCTCTAAATTTGGTAATCTTTTACCCTCTTTCCAAGTTTATCACAGGCCCCAAAATGGGCAAATATTGAACCTGGAAAAAGGGGTGAGGGAAAAAAAGGTTGAGGGCTACAAAAACAAGGGGAATACGAAGAGGGGTTTTTCGTTTATTTGGGGTTTTTTTGAGGATTTCGATTGAAACCCGTAATTTTTGAGGGTTTTTATCAACTGGGTGTTTGTGATTTGGGATATTTTCAAATGGGTCGAGGGAAGATTGAAATCAAAAGGATTGAGAATGCTAATAGCAGGCAAGTTACATTCTCGAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAAGAGCTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTCGAGTTTTCTAGTTCTGGCATGAAGCATACTCTTGCAAGATACAACAAATGTGTAGAATCTTCAGAGACTACAGTAGACGTGCACAAGGTCGAGAAGCAAGAGCATGAGGAGGTAGACATTCTAAGAGACGAAATAACAACTCTTCAAATGAAACAATTACAGCTATTGGGAAAGGATCTCACCGGTTTAGGCTTCAAAGAGTTGCAGAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAGCAACTAGAGCAATCAAGGGTACAGGAACAACGAGCAATGCTTGAGAACGAAACTCTGCGGAGACAGGTCAATGAGCTTCGGTGTCTGTTTCCGCCGGTTGATTGTCAGCTTCCTGCTTATCTTGAATACTGCTCTCTTGAACAGAAGAATATTGGCATTAGAAGCCCTGATATAGCCTGCAACTCCGAAATTGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGGGTGAGAGAGATACTCATTCAAATGATTCAGGGAGCCAAATGGGCCTACTATGATGTCTCTCTCTCTCTCATTCATTCTGATTAATTAGAATGGCGGCACAGACACTGACGAGACAAACCGGGATAATCAGTTTCATCTCCACCTTCAGAAACTGCAAATATTCATTAGGTGACTCTGAAACCATTGAAACAGAGAGAGTTAGAAATCCTCGTGTAGGAGAAGGAGATCAGTCATGAAAATGACATTGTTGCAGTTAGTTTTATTAGATTTTGGAGTCATTTGTTAAGAAGTTTGCAAACTCTAGCCCTTCACTTGTAGCTGCCTAAAGAAGGAATATTAGCTATTCTTTCTGGCTTATTTGTTAGCTGATCTGTAATTTTTCCTGCCTCACTTCTTCTGTGGCTGGATCAAATTTGGAATGCCAAGCTAAGGTTTCAATGTGTATTGAATTCTAAGGTGCTCTCTCTCTCTTGCTATCATCTCTATTTTCTTTTTCCAGTTTCCAGAAAAAAAGTGATCAATTGTAAACTTGTATTATTTATATTGCAGTTCAACAGTAAAGTTTATACATTATAACTCACAATCACAATTCAATATATAAAAAAAGTAGAAACAATCCAACCATGGCTATTGATTTCTCTGTCTTAGGCAATCAAGCAGTTTGCTTCTCTCTTCCAAAACGTCAGA 1642 39.59 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLARYNKCVESSETTVDVHKVEKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQVNELRCLFPPVDCQLPAYLEYCSLEQKNIGIRSPDIACNSEIERGDSDTTLHLGLPSHVYCKRKEGERDTHSNDSGSQMGLL 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39870489 39875024 + XM_039049168.1 Bhi11g01357 50069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g01357 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi11g01357 251 Coils Coil 149 176 - -
Bhi11g01357 251 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 229 - -
Bhi11g01357 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi11g01357 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi11g01357 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi11g01357 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi11g01357 251 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bhi11g01357 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi11g01357 251 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi11g01357 251 Coils Coil 123 143 - -
Bhi11g01357 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi11g01357 251 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Bhi11g01357 251 PANTHER MADS BOX PROTEIN 1 229 - -
Bhi11g01357 251 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Bhi11g01357 251 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g01354 Bhi-Chr11:39870487 Bhi11g01357 Bhi-Chr11:39870489 0 dispersed
Bhi11g01355 Bhi-Chr11:39870487 Bhi11g01357 Bhi-Chr11:39870489 7.23E-180 dispersed
Bhi11g01357 Bhi-Chr11:39870489 Bhi09g02527 Bhi-Chr9:68307216 1.39E-43 dispersed
Bhi11g01356 Bhi-Chr11:39870488 Bhi11g01357 Bhi-Chr11:39870489 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2381 PF01486 K-box 3.80E-17 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g01357 - - csv:101218805 436.417