Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g01603 CAAAGCAAACCAGCAACCCGAATTTCTCGATTCGGCGCGCAGTGGGGCATGCTCGAATCTTAGCCACCAAATTTTTCGGAGAAAAGCGATTTTGGGAATTTTGAAGAGGTTTTTCGATTGTGGTCACTCTTGAGCTTGAAACCGTGTTGATCATACTGTGAAATAGTGTAGAAATTGTTCGAAAATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAAGGGTTTTCTATGGACTTCCCTGTGGACCCTTCTGATTCTTATACGTTTCCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGTTAGGGTTACAAAAATGCACGTCTTGGCTTGCCGATGATTTAGGAAGTAGTGAGAGGACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCATTAAAGAAGATTAATATCTTTGAGAAGGAGAAAAGACAGCAGCTCCTCACTGAGATAAGGACACTATGCGAAGCGCCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGTCAAATAAGCATCGCTTTAGAGTACATGGATGGAGGGTCGTTGGCAGATGTCCTGCGTTTGAAAAAATGTATACCCGAGCCTGTCCTTTCGTCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTGCATGGAGTGAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTGTAAATCTAAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCACCAGAGAGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTTATGTTGCAGATTTTGGATGACCCGTCTCCATCACCATCAAAACAGAAGTTTTCGCCAGAGTTTTGCTCGTTTGTCGATGCCTGCTTGCAGAAAGAAGCAGATGCTAGGCCAACAGCAGACCAGCTGCTTTCCCACCCATTTATCAAAAAATATGAGGATGAACAAATAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAATACAGAGGATGAAGGACGTGGCAGATATGTTGACAATTCATTATTACTTGCTTTTTGATGGATCTGATGAATTCTGGCACCATACAAAAGCTTTGTACCATGAAAGCTCAACTTTAAGTTTTTCAGGGAAGCAATTTTCTGGTCCAGATGACATCTTTGCCAAACTATCAGATATTCGAAGTACATTAGCAGGAGACTGGCCTCTTGAAAAACTAGTTCACGTTGTTGAAAAACTCCAATGTCGAGCTCACGGTCGGGATGGAGTTGCCATAAGGGTGTCAGGATCCTTCATCCTCGGGAACCAGTTCCTCATATGTGGAGAGGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAGAGTAAGAAAATGGGATCCTTCCGGGAGCAGTTCATCATCGAACCAAGCAACCTCATCGGTCGTTACTTCATAGCCAAACAAGAGCTTTATATAATTCAATAGAAAAATGCCACTGCTGTTTGATCCTGTTTGTGCAACTTTTTGTGAATCTGCAACAAAATGGATCAACTCATCTGTAATTCCACCTAATTATGTGTCAAACCTACTCGATCGTCATAACTTAGAATGCGTCGCAACTATTTCTCACTCAAGATAAGTGAGAATATGATCTTAGTTCAAAGCATGGCTGCCTCGGAAAGGCTTTTGAGGCCTCATGAAATTAGTTAGAATATGATCTTAGTTACAAATGTATATTATATTTCATGCTCATTTGTCTATTTTGTGGTTTTTAATCTAATCTTCATCATTTCTATAGTTA 2057 41.47 MAGLEELKKKLTPLFDAEKGFSMDFPVDPSDSYTFPDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDLGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKQKFSPEFCSFVDACLQKEADARPTADQLLSHPFIKKYEDEQIDLAAFVQNVFDPIQRMKDVADMLTIHYYLLFDGSDEFWHHTKALYHESSTLSFSGKQFSGPDDIFAKLSDIRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGEGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 46148486 46154079 - XM_039047233.1 Bhi11g01603 50315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g01603 518 SUPERFAMILY Protein kinase-like (PK-like) 85 371 IPR011009 -
Bhi11g01603 518 CDD PKc_MAPKK_plant_like 84 343 - -
Bhi11g01603 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Bhi11g01603 518 Gene3D Transferase(Phosphotransferase) domain 1 159 362 - -
Bhi11g01603 518 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi11g01603 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Bhi11g01603 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Bhi11g01603 518 Gene3D - 363 517 - -
Bhi11g01603 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi11g01603 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Bhi11g01603 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi11g01603 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 517 - -
Bhi11g01603 518 PANTHER - 2 517 - -
Bhi11g01603 518 Gene3D Phosphorylase Kinase; domain 1 77 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g01603 K20607 MKK3; mitogen-activated protein kinase kinase 3 [EC:2.7.12.2] - csv:101217978 993.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g01601 Bhi-Chr11:46148486 Bhi11g01603 Bhi-Chr11:46148486 0 dispersed
Bhi11g01602 Bhi-Chr11:46148486 Bhi11g01603 Bhi-Chr11:46148486 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g01848 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 4.4e-136 481.9
Bhi02g01847 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 4.4e-136 481.9
Bhi06g01629 CCT 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.6 2.7e-125 446.0
Bhi06g01688 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.3 3.9e-108 389.0
Bhi06g01689 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.3 3.9e-108 389.0
Bhi02g01848 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 6.0e-133 471.5
Bhi02g01847 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 6.0e-133 471.5
Bhi06g01629 CCT 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.7 7.1e-118 421.4
Bhi06g01688 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 3.2e-110 396.0
Bhi06g01689 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 3.2e-110 396.0
Bhi11g01603 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi11g01601 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi11g01602 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi01g02812 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 66.3 1.2e-126 450.7
Bhi08g01328 . 46 319 MAP Kinase Kinase Gene Family AT1G51660 55.8 1.6e-83 307.4
Bhi01g02812 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 68.9 2.4e-129 459.5
Bhi08g01328 . 44 311 MAP Kinase Kinase Gene Family AT3G21220 54.9 5.3e-84 308.9
Bhi06g01688 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.7 2.2e-170 595.9
Bhi06g01689 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.7 2.2e-170 595.9
Bhi02g01848 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 6.7e-119 424.9
Bhi02g01847 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 6.7e-119 424.9
Bhi06g01629 CCT 1 340 MAP Kinase Kinase Gene Family AT5G56580 56.4 6.3e-109 391.7
Bhi08g01328 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.4 6.7e-107 384.8
Bhi01g02812 . 69 335 MAP Kinase Kinase Gene Family AT1G18350 51.8 2.7e-76 283.1
Bhi08g01328 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 51.6 5.1e-80 295.4
Bhi08g01328 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 66.8 5.7e-114 408.3
Bhi01g02812 . 76 335 MAP Kinase Kinase Gene Family AT1G73500 52.5 7.2e-77 285.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88396 PF00069 Pkinase 5.30E-59 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g01603 Bhi_Chr11 FPKM 3.360242 4.216043 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0