Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g01831 CCAACCTCCGGTTCGCGGTGTTGACGTTTACATGGATCTCTGTCTCTTTCTCTTACGCTCTCTTCTTTCCCAAACTCATGCATTACTCCTTCCCTCCCTTCATTCCCAATTCCCATTTCAGATCTCCTTTCCGCCATGGAAATCCCTTCCACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACACCGCTCGCCGTGCCGCTCTTGTTCGCGCTCTTGCTCACGATGTCGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTTTATGGACATCCCAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGCATGAACAGAAAAGATTGGCTCTCTCTTGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTCGGAGCAAGGCTTAATCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGCCAAAGAGAAGCATAGTGTAGATAGTGGAAGCAGATCGCAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCTAAACATGCCGAACAGAGTTGCGAGGAGGATGTCGATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTCTGGATTGGTTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCAAACAATACAAATGCCCTTCTTGCAGCATGAAGAAGGGCAGACAGTAGAAACTAAAAGGCGTAATGAATGGCCTAAAAGTATCGCCTGGTGATTTGAGAAAGTGACTGATGAAGCAAGTAACAATATTTCTTAATTTATGTATGAATTTGTAGTTTATACGTTTATACTCTCATAGGTGTGTTGGATCCTGAAGTTGACCTCTCTGAAGTCTCAACTATATCACATTATTTAATTATGCTGGTATATATATTGTTTACTTTAGGATAATTATCTCAA 1087 43.33 MEIPSTTPKTVEEIFKDYTARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPAKEKHSVDSGSRSQGSAKRSNDGQVKSNPKHAEQSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 52481651 52484283 - XM_039047118.1 Bhi11g01831 50543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g01831 240 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Bhi11g01831 240 MobiDBLite consensus disorder prediction 149 169 - -
Bhi11g01831 240 Pfam PHD-finger 187 235 IPR019787 -
Bhi11g01831 240 CDD PHD_AL_plant 186 236 IPR044104 -
Bhi11g01831 240 MobiDBLite consensus disorder prediction 138 176 - -
Bhi11g01831 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Bhi11g01831 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
Bhi11g01831 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Bhi11g01831 240 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 5 239 - -
Bhi11g01831 240 PANTHER CPG BINDING PROTEIN 5 239 IPR045104 GO:0006355|GO:0042393
Bhi11g01831 240 SMART PHD_3 186 234 IPR001965 -
Bhi11g01831 240 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00552 Bhi-Chr7:22848955 Bhi11g01831 Bhi-Chr11:52481651 1.46E-125 dispersed
Bhi11g01831 Bhi-Chr11:52481651 Bhi09g00348 Bhi-Chr9:7201780 9.43E-93 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2426 PF12165 Alfin 7.80E-67 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g01831 - - csv:101211970 467.618