Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bhi11g01900 | TAATCGAATGGTTAGGTGAGTATTCAATGTTAGCGACAAACTTAAAGACATTGGTAAGCGTCACTTGGTGATCTATTTCCATCAACAAGATGTTTGATGAAAGTGAAAGGGCATTTTGCATTACATAGAATGTCATCAAACGTATGGAATCAACTGAGAACATAGATTCTTGTGTATTGTAGCTAACAGATCTTCCAGAACCTTTTTCTTTTTCTTTTTCTCTTTTTCAATTTTCAATTTTTTTTTTCAATTTTTGTTTTGTAATTTGTGTCCCCCCCACCACCCCACTTCTTTCTTTTTCTTCCCAGTAATTTCCTCTGAATTCTCTGGTGACCATTGCACGTTTCTGTTCATCTTTACAGTCCTCACTTCCGTTCAAGCCCTCCAACATTAGCACAGACCTCTGTCTGTCGGACCATTGTTTTATTCTTTACCAAATCCTCTTGTTTTTAACAGAACCATGAGTTCTATTATAACTTCCTCTTCAATTCTATATTGCAAACTTTAATTAATGGAGTTGAAGGGGTGTTACCGAATCCAATAACCCACTTCTTTAAATGCCAAAGTTCGGAGAAATTAATTGGAGCCGTCGTTGGTTGGTTCTCTGATATGTGCTTGGTCTGTGGTGGAAGTGGTTGTGAAAGAGTTTTAGCTTGTGGGTTAAGAAAATGGGGCCGCAGGAAGTTTCCCAGTCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTCAGCGGTAGTGACTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGACGAGGGTTCGTGTTATTCTCAGTTTTTTTCGACCAACGGTGGCTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCGTCGGTTTCGGATCGTTCGGTGGAGGTTGAAAATGAAAATGGGATTACTGAAATTAAGGTGCATTCAGCTAAAGTAGAGAGAGATTGTAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCATGCAAGGATGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATCAAAGGAAATAAGACATGTGAGATTTGCCATTCCATTGCACGGAATATTCTCGGACCAAACGAGGTTGAGTTAACAGAGCAATCTAATGAATCCAACAACGCCTCCTCGACAACTACAGTTGCTGCATCAATTCCTTCATCAGACAGCCAAAGCTTCTGGCGTGGGCATCGGTTTCTGAATTTTCTACTTGCTTGCATGGTCTTTGCTTTTGTTATATCTTGGCTGTTTCACTTCAATGTGCCCTCGTAAACATATTGCCTAGAAGTAAGTAGTATCGAAGACGGGGGGAAATCCGATTAAGGAACTTGCAGAATTTGCAGCTGCAAAAGACCCTCCAGAGAATTGCCTACAGAGTGTCCATAACTTCATATAGATTATCATCCTATACACATGTACCTATCCCAACATTCCCCACAAAAGTTCTTTTTTTTTCCACTGCACTTCCATTCAATTCCAAGTTCTAGAGAAATGTGGTTCAGTCGAGAACATCCTTGATGATTCTGAGTTTTCCAACGAGCATCATCTCTCATTTTTCTTACTA | 1656 | 41.06 | MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCYSQFFSTNGGSYDEYRFAFVSQPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNESNNASSTTTVAASIPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS | 231 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 54163095 | 54166262 | + | XM_039048712.1 | Bhi11g01900 | 50612 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bhi11g01900 | 231 | PANTHER | ZINC FINGER, RING-CH-TYPE | 8 | 231 | - | - | |
| Bhi11g01900 | 231 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Bhi11g01900 | 231 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270 | |
| Bhi11g01900 | 231 | PANTHER | OS01G0850200 PROTEIN | 8 | 231 | - | - | |
| Bhi11g01900 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 166 | IPR013083 | - | |
| Bhi11g01900 | 231 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
| Bhi11g01900 | 231 | SUPERFAMILY | RING/U-box | 104 | 161 | - | - | |
| Bhi11g01900 | 231 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270 | |
| Bhi11g01900 | 231 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bhi03g02093 | Bhi11g01900 | CCT | |
| Bhi03g02093 | Bhi11g01900 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bhi08g00549 | Bhi-Chr8:18737601 | Bhi11g01900 | Bhi-Chr11:54163095 | 7.41E-49 | dispersed | |
| Bhi08g00550 | Bhi-Chr8:18737602 | Bhi11g01900 | Bhi-Chr11:54163095 | 7.41E-49 | dispersed | |
| Bhi11g01900 | Bhi-Chr11:54163095 | Bhi08g00282 | Bhi-Chr8:10758939 | 2.17E-12 | dispersed | |
| Bhi12g00064 | Bhi-Chr12:1815464 | Bhi11g01900 | Bhi-Chr11:54163095 | 7.38E-12 | dispersed | |
| Bhi03g00267 | Bhi-Chr3:5705307 | Bhi11g01900 | Bhi-Chr11:54163095 | 1.20E-31 | transposed | |
| Bhi05g01931 | Bhi-Chr5:60177212 | Bhi11g01900 | Bhi-Chr11:54163095 | 3.34E-28 | transposed | |
| Bhi11g01900 | Bhi-Chr11:54163095 | Bhi03g02093 | Bhi-Chr3:45200867 | 8.16E-60 | wgd | |
| Bhi11g01900 | Bhi-Chr11:54163095 | Bhi04g02349 | Bhi-Chr4:64503502 | 4.36E-72 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bhi11g01900 | - | - | csv:101218915 | 431.409 |