Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g02015 GTACTCTAATTTTTCCTCTCTCTCTGTAAGCCCGTTCGAGAAACGGAAATTCAATATCCTATTTTGCTCTCTTTTACTCTCTGCATTTATTCCATAATCAACCAGAGATTCCAAAGAAAAACCGTCACCAGCATTCAGGTGTTTGTGCGATTTCCTTTTCGCAATGGCGGCAGTTTCTCAGACGACGGTTCATGCCTCTCCGGCTTCCCTTTACGTCGGCGACCTTCATCCTGACGTCACTGATGGCCAGCTCTTTGATGCTTTCTCCGGATTCAAGAGCCTCGCCTCTGTTCGTATCTGTAGAGATTCCTCCACTGGACGTTCTCTATCTTATGGCTATGTCAATTTCATTTCTCCTCAAGATGCAACCAATGCCATGGAGGTAATGAATCACAGTATGCTGAATGGAAGAGCGATTCGAGTCATGTGGTCACGTCGGGATGCTGATGCAAGAAAGAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATAGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTTGCCACATCCGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCTGAGGATTCTGCAAATGCTGCCATAGAGTCACTGAATGGTTTTACCATTGGGGATAAGCAGATATATGTTGGAAAGTTTGTCAGGAAGAGTGATCGAGTTTTGGCCAATGCTGATGTTAAATATACCAATTTGTATGTGAAAAATCTTGACCCTGAGATTGGGGAAGAGCATTTGCAGGAAAAATTCTCTGAGTTTGGAAAAATTTCCAGCATGATTGTTTCAAGGGATGAGAATGGGGTGTCAAGGGGTTTTGGCTTTATTAACTTTGACAACCCAGATGATGCCAAACGGGCATTGGAAACACTTAATGGATCGCAACTTGGTTCGAAGGTTATCTACATTGCGAGGGCACAAAAGAAGACCGAACGTGAGGAAGTATTACGTCGTCATTATGAAGAGAAATGTAAGGAGCAAGTGTTAAAATACAAGGGATCAAATGTGTATGTGAAGAACATTGATGATGGTGTTACTGATGAAGAACTAAGAGAACGTTTTAGCCAATTTGGCACCATCACTTCATCAAAACTTATGCGAGATGATAAGGGAATAAACAAAGGGTTTGGATTTGTCTGCTTCTCCAATCCTGATGAAGCTAAAAGAGCCGTGAACACTTTGCAAGGATGTATGTTTCACGGGAAGCCACTCTATTTGGCTATAGCACAAAGAAAAGAGGATAGACAAATGCAATTGAAGCTTCAGTTTGCACAGCGGCTGGCAGGGATACCTGGACCGTCAACTACAATTTTTCCCGGTGGATACACACCTTATTACTACCCAGCACCAGGTGTTGTTCCACCAGTACCATCTCGTCCAGGTCTGATGTTTCAGCCTTTAGGAATGAGGCCTGGGTGGAGAGCTAATACTTACACATCTCCTGCAAGACCTGGCTTTCAACCTTCTCCTGTACCTATTATTCCGAATGCTTCGAGGCAACCCAGGCAAAACAGAGGCAAAATGAATGGACCTCTGCTTTCTCATCAAAATGGAGTCCAATCTGTCTCTTATATGCAAAATTCACAAGATGCCAATCAATCAATAGTTACTGCAAAATCATCCGGCAATCAACAGGTTAAGTATGTCCCAAATGCTCGCCCATGCGAAACGAACAAAGCTTCTGGAGCCGCGTCAGCTGCTGCTTTTAATTCTGCTGTTGGAGATGTCTCTCAGGGATCACAAATACTGAGCAGCATGCTTGCTTCCTCTCCCCCAGACCAACAGAAACAGATCCTTGGGGAGCATCTTTACCCCTTAGTCCAAAAACGCAAGCCGGACCTTGCTGCGAAGATTACAGGAATGCTTCTGGAGATGGACAACTCGGAATTACTGCTCCTGTTAGAGTCACCTGAATCTCTGGCTGCCAAGGTTGAAGAAGCAGTGCAGGTGCTTAAGATCTCAAAGACTAAGCTTTCCAACCAAGACACACTCAATTTCTTACCAGCTGAGCTTGCAGTTAACTGAAAGGAAGCAAAACTCTTCCAACTTAAATTCACTTCCTCAGCGAATTTTTGCTAATTCCTTAGCTCGAAGTCCCGGGAGAGTACGACAGATCGACCATCTCTAGATTTCTGGTCTGGAAGAGTGTTCTTTCCAGATTTTGCAGTCAGTTTTTTTTCTTTTGTTTCTATCTTATGTTGAGGAACATTTTAATCTTCTTCCATTTCTTAGAAACTACTAACCTTTACTAGTCTAGTAGTATCTTTTCTTTTGTCAGAGTCAGGA 2335 42.96 MAAVSQTTVHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAMEVMNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEDSANAAIESLNGFTIGDKQIYVGKFVRKSDRVLANADVKYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIVSRDENGVSRGFGFINFDNPDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDGVTDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTTIFPGGYTPYYYPAPGVVPPVPSRPGLMFQPLGMRPGWRANTYTSPARPGFQPSPVPIIPNASRQPRQNRGKMNGPLLSHQNGVQSVSYMQNSQDANQSIVTAKSSGNQQVKYVPNARPCETNKASGAASAAAFNSAVGDVSQGSQILSSMLASSPPDQQKQILGEHLYPLVQKRKPDLAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLKISKTKLSNQDTLNFLPAELAVN 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 57382724 57387235 - XM_039049899.1 Bhi11g02015 50727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g02015 636 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 541 618 IPR002004 GO:0003723
Bhi11g02015 636 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 14 614 IPR006515 GO:0003723
Bhi11g02015 636 SUPERFAMILY RNA-binding domain, RBD 14 181 IPR035979 GO:0003676
Bhi11g02015 636 Gene3D - 103 187 IPR012677 -
Bhi11g02015 636 Gene3D - 282 383 IPR012677 -
Bhi11g02015 636 Gene3D - 188 281 IPR012677 -
Bhi11g02015 636 PANTHER RNA BINDING PROTEIN 8 622 - -
Bhi11g02015 636 PANTHER POLYADENYLATE-BINDING PROTEIN 8 622 - -
Bhi11g02015 636 Coils Coil 265 285 - -
Bhi11g02015 636 CDD RRM1_I_PABPs 15 93 - -
Bhi11g02015 636 SUPERFAMILY RNA-binding domain, RBD 293 387 IPR035979 GO:0003676
Bhi11g02015 636 SMART rrm2_1 297 369 IPR003954 GO:0003676
Bhi11g02015 636 SMART rrm2_1 194 266 IPR003954 GO:0003676
Bhi11g02015 636 SMART rrm2_1 103 175 IPR003954 GO:0003676
Bhi11g02015 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 270 IPR000504 GO:0003723
Bhi11g02015 636 SUPERFAMILY RNA-binding domain, RBD 186 280 IPR035979 GO:0003676
Bhi11g02015 636 SMART poly_2 553 616 IPR002004 GO:0003723
Bhi11g02015 636 CDD RRM2_I_PABPs 100 176 IPR045305 -
Bhi11g02015 636 Gene3D - 3 102 IPR012677 -
Bhi11g02015 636 Pfam Poly-adenylate binding protein, unique domain 548 613 IPR002004 GO:0003723
Bhi11g02015 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 373 IPR000504 GO:0003723
Bhi11g02015 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723
Bhi11g02015 636 SUPERFAMILY PABC (PABP) domain 538 624 IPR036053 GO:0003723
Bhi11g02015 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 179 IPR000504 GO:0003723
Bhi11g02015 636 SMART rrm1_1 297 369 IPR000504 GO:0003723
Bhi11g02015 636 SMART rrm1_1 194 266 IPR000504 GO:0003723
Bhi11g02015 636 SMART rrm1_1 103 175 IPR000504 GO:0003723
Bhi11g02015 636 SMART rrm1_1 15 88 IPR000504 GO:0003723
Bhi11g02015 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Bhi11g02015 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 366 IPR000504 GO:0003723
Bhi11g02015 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 263 IPR000504 GO:0003723
Bhi11g02015 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 172 IPR000504 GO:0003723
Bhi11g02015 636 Gene3D - 538 618 - -
Bhi11g02015 636 CDD RRM4_I_PABPs 295 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01590 Bhi-Chr4:39998563 Bhi11g02015 Bhi-Chr11:57382724 3.85E-146 dispersed
Bhi11g02015 Bhi-Chr11:57382724 Bhi12g00462 Bhi-Chr12:14858657 2.14E-13 dispersed
Bhi12g02279 Bhi-Chr12:73126752 Bhi11g02015 Bhi-Chr11:57382724 8.85E-13 dispersed
Bhi12g02280 Bhi-Chr12:73126754 Bhi11g02015 Bhi-Chr11:57382724 8.85E-13 dispersed
Bhi12g02506 Bhi-Chr12:78614070 Bhi11g02015 Bhi-Chr11:57382724 1.14E-09 dispersed
Bhi12g02507 Bhi-Chr12:78618121 Bhi11g02015 Bhi-Chr11:57382724 1.08E-09 dispersed
Bhi11g02015 Bhi-Chr11:57382724 Bhi05g01075 Bhi-Chr5:38774445 1.52E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g02015 K13126 - csv:101203793 1136.32