Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bhi11g02015 | GTACTCTAATTTTTCCTCTCTCTCTGTAAGCCCGTTCGAGAAACGGAAATTCAATATCCTATTTTGCTCTCTTTTACTCTCTGCATTTATTCCATAATCAACCAGAGATTCCAAAGAAAAACCGTCACCAGCATTCAGGTGTTTGTGCGATTTCCTTTTCGCAATGGCGGCAGTTTCTCAGACGACGGTTCATGCCTCTCCGGCTTCCCTTTACGTCGGCGACCTTCATCCTGACGTCACTGATGGCCAGCTCTTTGATGCTTTCTCCGGATTCAAGAGCCTCGCCTCTGTTCGTATCTGTAGAGATTCCTCCACTGGACGTTCTCTATCTTATGGCTATGTCAATTTCATTTCTCCTCAAGATGCAACCAATGCCATGGAGGTAATGAATCACAGTATGCTGAATGGAAGAGCGATTCGAGTCATGTGGTCACGTCGGGATGCTGATGCAAGAAAGAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATAGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTTGCCACATCCGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCTGAGGATTCTGCAAATGCTGCCATAGAGTCACTGAATGGTTTTACCATTGGGGATAAGCAGATATATGTTGGAAAGTTTGTCAGGAAGAGTGATCGAGTTTTGGCCAATGCTGATGTTAAATATACCAATTTGTATGTGAAAAATCTTGACCCTGAGATTGGGGAAGAGCATTTGCAGGAAAAATTCTCTGAGTTTGGAAAAATTTCCAGCATGATTGTTTCAAGGGATGAGAATGGGGTGTCAAGGGGTTTTGGCTTTATTAACTTTGACAACCCAGATGATGCCAAACGGGCATTGGAAACACTTAATGGATCGCAACTTGGTTCGAAGGTTATCTACATTGCGAGGGCACAAAAGAAGACCGAACGTGAGGAAGTATTACGTCGTCATTATGAAGAGAAATGTAAGGAGCAAGTGTTAAAATACAAGGGATCAAATGTGTATGTGAAGAACATTGATGATGGTGTTACTGATGAAGAACTAAGAGAACGTTTTAGCCAATTTGGCACCATCACTTCATCAAAACTTATGCGAGATGATAAGGGAATAAACAAAGGGTTTGGATTTGTCTGCTTCTCCAATCCTGATGAAGCTAAAAGAGCCGTGAACACTTTGCAAGGATGTATGTTTCACGGGAAGCCACTCTATTTGGCTATAGCACAAAGAAAAGAGGATAGACAAATGCAATTGAAGCTTCAGTTTGCACAGCGGCTGGCAGGGATACCTGGACCGTCAACTACAATTTTTCCCGGTGGATACACACCTTATTACTACCCAGCACCAGGTGTTGTTCCACCAGTACCATCTCGTCCAGGTCTGATGTTTCAGCCTTTAGGAATGAGGCCTGGGTGGAGAGCTAATACTTACACATCTCCTGCAAGACCTGGCTTTCAACCTTCTCCTGTACCTATTATTCCGAATGCTTCGAGGCAACCCAGGCAAAACAGAGGCAAAATGAATGGACCTCTGCTTTCTCATCAAAATGGAGTCCAATCTGTCTCTTATATGCAAAATTCACAAGATGCCAATCAATCAATAGTTACTGCAAAATCATCCGGCAATCAACAGGTTAAGTATGTCCCAAATGCTCGCCCATGCGAAACGAACAAAGCTTCTGGAGCCGCGTCAGCTGCTGCTTTTAATTCTGCTGTTGGAGATGTCTCTCAGGGATCACAAATACTGAGCAGCATGCTTGCTTCCTCTCCCCCAGACCAACAGAAACAGATCCTTGGGGAGCATCTTTACCCCTTAGTCCAAAAACGCAAGCCGGACCTTGCTGCGAAGATTACAGGAATGCTTCTGGAGATGGACAACTCGGAATTACTGCTCCTGTTAGAGTCACCTGAATCTCTGGCTGCCAAGGTTGAAGAAGCAGTGCAGGTGCTTAAGATCTCAAAGACTAAGCTTTCCAACCAAGACACACTCAATTTCTTACCAGCTGAGCTTGCAGTTAACTGAAAGGAAGCAAAACTCTTCCAACTTAAATTCACTTCCTCAGCGAATTTTTGCTAATTCCTTAGCTCGAAGTCCCGGGAGAGTACGACAGATCGACCATCTCTAGATTTCTGGTCTGGAAGAGTGTTCTTTCCAGATTTTGCAGTCAGTTTTTTTTCTTTTGTTTCTATCTTATGTTGAGGAACATTTTAATCTTCTTCCATTTCTTAGAAACTACTAACCTTTACTAGTCTAGTAGTATCTTTTCTTTTGTCAGAGTCAGGA | 2335 | 42.96 | MAAVSQTTVHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAMEVMNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEDSANAAIESLNGFTIGDKQIYVGKFVRKSDRVLANADVKYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIVSRDENGVSRGFGFINFDNPDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDGVTDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTTIFPGGYTPYYYPAPGVVPPVPSRPGLMFQPLGMRPGWRANTYTSPARPGFQPSPVPIIPNASRQPRQNRGKMNGPLLSHQNGVQSVSYMQNSQDANQSIVTAKSSGNQQVKYVPNARPCETNKASGAASAAAFNSAVGDVSQGSQILSSMLASSPPDQQKQILGEHLYPLVQKRKPDLAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLKISKTKLSNQDTLNFLPAELAVN | 636 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 57382724 | 57387235 | - | XM_039049899.1 | Bhi11g02015 | 50727 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bhi11g02015 | 636 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 541 | 618 | IPR002004 | GO:0003723 | |
Bhi11g02015 | 636 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 14 | 614 | IPR006515 | GO:0003723 | |
Bhi11g02015 | 636 | SUPERFAMILY | RNA-binding domain, RBD | 14 | 181 | IPR035979 | GO:0003676 | |
Bhi11g02015 | 636 | Gene3D | - | 103 | 187 | IPR012677 | - | |
Bhi11g02015 | 636 | Gene3D | - | 282 | 383 | IPR012677 | - | |
Bhi11g02015 | 636 | Gene3D | - | 188 | 281 | IPR012677 | - | |
Bhi11g02015 | 636 | PANTHER | RNA BINDING PROTEIN | 8 | 622 | - | - | |
Bhi11g02015 | 636 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 8 | 622 | - | - | |
Bhi11g02015 | 636 | Coils | Coil | 265 | 285 | - | - | |
Bhi11g02015 | 636 | CDD | RRM1_I_PABPs | 15 | 93 | - | - | |
Bhi11g02015 | 636 | SUPERFAMILY | RNA-binding domain, RBD | 293 | 387 | IPR035979 | GO:0003676 | |
Bhi11g02015 | 636 | SMART | rrm2_1 | 297 | 369 | IPR003954 | GO:0003676 | |
Bhi11g02015 | 636 | SMART | rrm2_1 | 194 | 266 | IPR003954 | GO:0003676 | |
Bhi11g02015 | 636 | SMART | rrm2_1 | 103 | 175 | IPR003954 | GO:0003676 | |
Bhi11g02015 | 636 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 193 | 270 | IPR000504 | GO:0003723 | |
Bhi11g02015 | 636 | SUPERFAMILY | RNA-binding domain, RBD | 186 | 280 | IPR035979 | GO:0003676 | |
Bhi11g02015 | 636 | SMART | poly_2 | 553 | 616 | IPR002004 | GO:0003723 | |
Bhi11g02015 | 636 | CDD | RRM2_I_PABPs | 100 | 176 | IPR045305 | - | |
Bhi11g02015 | 636 | Gene3D | - | 3 | 102 | IPR012677 | - | |
Bhi11g02015 | 636 | Pfam | Poly-adenylate binding protein, unique domain | 548 | 613 | IPR002004 | GO:0003723 | |
Bhi11g02015 | 636 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 296 | 373 | IPR000504 | GO:0003723 | |
Bhi11g02015 | 636 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 14 | 92 | IPR000504 | GO:0003723 | |
Bhi11g02015 | 636 | SUPERFAMILY | PABC (PABP) domain | 538 | 624 | IPR036053 | GO:0003723 | |
Bhi11g02015 | 636 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 102 | 179 | IPR000504 | GO:0003723 | |
Bhi11g02015 | 636 | SMART | rrm1_1 | 297 | 369 | IPR000504 | GO:0003723 | |
Bhi11g02015 | 636 | SMART | rrm1_1 | 194 | 266 | IPR000504 | GO:0003723 | |
Bhi11g02015 | 636 | SMART | rrm1_1 | 103 | 175 | IPR000504 | GO:0003723 | |
Bhi11g02015 | 636 | SMART | rrm1_1 | 15 | 88 | IPR000504 | GO:0003723 | |
Bhi11g02015 | 636 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 16 | 86 | IPR000504 | GO:0003723 | |
Bhi11g02015 | 636 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 298 | 366 | IPR000504 | GO:0003723 | |
Bhi11g02015 | 636 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 195 | 263 | IPR000504 | GO:0003723 | |
Bhi11g02015 | 636 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 104 | 172 | IPR000504 | GO:0003723 | |
Bhi11g02015 | 636 | Gene3D | - | 538 | 618 | - | - | |
Bhi11g02015 | 636 | CDD | RRM4_I_PABPs | 295 | 373 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bhi04g01590 | Bhi-Chr4:39998563 | Bhi11g02015 | Bhi-Chr11:57382724 | 3.85E-146 | dispersed | |
Bhi11g02015 | Bhi-Chr11:57382724 | Bhi12g00462 | Bhi-Chr12:14858657 | 2.14E-13 | dispersed | |
Bhi12g02279 | Bhi-Chr12:73126752 | Bhi11g02015 | Bhi-Chr11:57382724 | 8.85E-13 | dispersed | |
Bhi12g02280 | Bhi-Chr12:73126754 | Bhi11g02015 | Bhi-Chr11:57382724 | 8.85E-13 | dispersed | |
Bhi12g02506 | Bhi-Chr12:78614070 | Bhi11g02015 | Bhi-Chr11:57382724 | 1.14E-09 | dispersed | |
Bhi12g02507 | Bhi-Chr12:78618121 | Bhi11g02015 | Bhi-Chr11:57382724 | 1.08E-09 | dispersed | |
Bhi11g02015 | Bhi-Chr11:57382724 | Bhi05g01075 | Bhi-Chr5:38774445 | 1.52E-07 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bhi11g02015 | K13126 | - | csv:101203793 | 1136.32 |