Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g02230 AAGCTAAATATTGACCGCGAACCCAAAGCTTCTTTTCCATTTCGGTTTTTTGCCGCTCTGCTCTTCTCTCTCGTTTTCTCTCTTTCAGGTTTTCCCGGACAAAACCCTAGCCCTAACTAATCCGCCCTTCGTCGTATTCCGATCTGATTCTACTCCGTATACACCTGAAATCTGTTGCTGACCGGACAGATCTCAGATCCGTAGTTATTCGGAATTCAATCGGAGGCTATGCTGCTTGCCGCTTGGATTTTATCTGTCATTTCTTTTGATTCTTGACTTGTTCTCATCGGATTCTACAATTTTAGGTTTCAAGAAAGGCGTCAAGGTTTTCTTGAAGTTTAGCATTTGAATTCTCGGGCTTTAAGGAATTGTAGTCAGTTTCTTACGTGATTCTGGATTTTCGTTTCCACTCTGTGTGGGCTTTTTGGATGCTGTCGATTGGGTTTGCGGGATTATTAGCTACTGGCTCTGTAGATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGTCTTTGCATAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTATCGAATCCCGTAGTTTCTCCAAAAGGGAATCATTTCCATGATATTACTAGCCAACCCGAGGAGCTAGCAAATACCAACCAAATTGAGCGTGGGGACCTTACGTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGCGATTCGTTGCCAGAATGATACGTCTCGAAATGACACTATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAGTTCAGCAAAAAGAAGGACAACAATGGCTCATCCATGTCAGCAGACAAAGTTCATTCTTATGGAAACTCTGACAAGGACGGTAAACCAGAATCTTCCTTGGTGGATGATACTTGTACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTCTAGGCCCAACTAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAATATATATCTACGACGAGCGAGATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTTAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATATATAGCGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCGGGTTCAGCTGTTAACATGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAAATATTGAAGTGGAAAATGATGTTGCGAAGCTTCCTAAATTGTCACATCCCATTGAGAGAGCGAACCCTAATTTCTCCAACCCAGTCCTGCATCAGAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTGCTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTCTGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACAAATGGCCTTACACTTCATGATATTGCCATTTCCTTAGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATATTCTGTGATCGCTGCCCTCGAGCTTTCCATACAGGCTGTCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAAAGATAAAGTGGGTTCCAATTCGAAGGTTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTTTTTAGGTTGACAAGAGTTGTTAAAGCACCTGAGTATGAGATTGGTGGCTGTGTTGTTTGCAGGCGACACGATTTCAGTGCTGCTAAGTTTGATGATCGTACAGTACTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTCGCTCTTCAGAATACTGTTTTGAATGGGGCACAGATAATTCCAGATTCATTGTCTGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTTTTAGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTCGATCCCATTGTTGCAAAATCAGGTCGTGATCTGATACCTGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTCTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTCGGATATTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCCGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATAAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACGTCAATGCTAGAGAAAGTGGTGCAGCAATCGACGATATAACGTTGTGTCATGATTGGTGCGCATGTCTCTATTGAAATAATTCCAAGTTAGGTTCTCCTCGGAAGGAAGGGTTTTAGCTGAAAGTTGGGAATTATATATATATTTTTAATTTCATTATTTTCCCCTTTTAATGTCCTCCATAGCAAATAGTTGTGATGTATAAATTGCCTGCGAGTTTTGATTTCGACTGGCAGCCTGAAGAAACAGAAGGTTGTTCTGTTTGTACAAACTAGAAATTAGATAGCTAACTAATTGGAGGGGCGCAACTGAAGAAAGAGAGAGAGAAAAAAGAAAAAAGAAAAAAAAGAAAAAATTTTGCATGCTGACCTTTTATCATGCATGCTGGAGATCTCTCACTTTGTTTTTCTGTTGTTTTTGACTTTGGATTGATCATATATTTCATGTAGTTCTTCCAAAAGTGTAAAAAAGAATAATAGAAAAAAAGCCTGAAAATGCCAGATTGTGTTGCTGTTGCGGACATAGGCCAAACTTTGGAAGAAGGCTGTTTTTGCCTTTGCCTGTTGCCACTAAATTTTAACTACACATAAATTTTCATCTCA 3512 41.69 MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEVSNPVVSPKGNHFHDITSQPEELANTNQIERGDLTSACSGNSSSEDISSDAIRCQNDTSRNDTMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNNGSSMSADKVHSYGNSDKDGKPESSLVDDTCTETSAHSWEGCAESSRYPLGPTKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSAVNMDSFEAWKASFHQNSANIEVENDVAKLPKLSHPIERANPNFSNPVLHQKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWSCPNCKDKVGSNSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGFLVDEALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLIKYMREVQLTIFNGTSMLEKVVQQSTI 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 61072424 61080502 - XM_039048640.1 Bhi11g02230 50942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g02230 818 Gene3D - 649 813 - -
Bhi11g02230 818 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 341 815 - -
Bhi11g02230 818 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 33 334 - -
Bhi11g02230 818 ProSitePatterns Zinc finger PHD-type signature. 547 602 IPR019786 -
Bhi11g02230 818 SMART PHD_3 546 603 IPR001965 -
Bhi11g02230 818 SMART PHD_3 467 508 IPR001965 -
Bhi11g02230 818 SUPERFAMILY FYVE/PHD zinc finger 545 600 IPR011011 -
Bhi11g02230 818 MobiDBLite consensus disorder prediction 1 75 - -
Bhi11g02230 818 ProSitePatterns Zinc finger PHD-type signature. 468 507 IPR019786 -
Bhi11g02230 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 545 605 IPR013083 -
Bhi11g02230 818 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 702 790 IPR016181 -
Bhi11g02230 818 ProSiteProfiles Zinc finger PHD-type profile. 465 510 IPR019787 -
Bhi11g02230 818 Pfam PHD-finger 467 509 IPR019787 -
Bhi11g02230 818 MobiDBLite consensus disorder prediction 57 75 - -
Bhi11g02230 818 MobiDBLite consensus disorder prediction 156 188 - -
Bhi11g02230 818 MobiDBLite consensus disorder prediction 21 56 - -
Bhi11g02230 818 SUPERFAMILY FYVE/PHD zinc finger 463 510 IPR011011 -
Bhi11g02230 818 PANTHER AUTOIMMUNE REGULATOR 33 334 - -
Bhi11g02230 818 PANTHER AUTOIMMUNE REGULATOR 341 815 - -
Bhi11g02230 818 MobiDBLite consensus disorder prediction 170 184 - -
Bhi11g02230 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 456 528 IPR013083 -
Bhi11g02230 818 ProSiteProfiles Zinc finger PHD-type profile. 544 605 IPR019787 -
Bhi11g02230 818 Pfam Tify domain binding domain 401 450 IPR032308 -
Bhi11g02230 818 Pfam Tify domain binding domain 252 288 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g02230 - - - csv:101207817 1531.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g02031 Bhi-Chr11:57655962 Bhi11g02230 Bhi-Chr11:61072424 4.77E-160 dispersed
Bhi11g02032 Bhi-Chr11:57655963 Bhi11g02230 Bhi-Chr11:61072424 9.85E-163 dispersed
Bhi11g02230 Bhi-Chr11:61072424 Bhi10g00825 Bhi-Chr10:16634746 1.61E-44 dispersed
Bhi11g02230 Bhi-Chr11:61072424 Bhi11g02231 Bhi-Chr11:61072424 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g02231 . 18 836 PHD Transcription Factor Family AT3G53680 53.9 8.4e-253 870.9
Bhi11g02230 . 18 813 PHD Transcription Factor Family AT3G53680 52.6 8.1e-240 827.8
Bhi07g00927 . 436 565 PHD Transcription Factor Family AT3G53680 54.6 1.8e-37 155.6
Bhi10g00666 . 343 468 PHD Transcription Factor Family AT3G53680 53.5 4.4e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2479 PF16135 TDBD 1.20E-14 No_clan Bhi TR