Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g02231 GCTAAATATTGACCGCGAACCCAAAGCTTCTTTTCCATTTCGGTTTTTTGCCGCTCTGCTCTTCTCTCTCGTTTTCTCTCTTTCAGGTTTTCCCGGACAAAACCCTAGCCCTAACTAATCCGCCCTTCGTCGTATTCCGATCTGATTCTACTCCGTATACACCTGAAATCTGTTGCTGACCGGACAGATCTCAGATCCGTAGTTATTCGGAATTCAATCGGAGGCTATGCTGCTTGCCGCTTGGATTTTATCTGTCATTTCTTTTGATTCTTGACTTGTTCTCATCGGATTCTACAATTTTAGGTTTCAAGAAAGGCGTCAAGGTTTTCTTGAAGTTTAGCATTTGAATTCTCGGGCTTTAAGGAATTGTAGTCAGTTTCTTACGTGATTCTGGATTTTCGTTTCCACTCTGTGTGGGCTTTTTGGATGCTGTCGATTGGGTTTGCGGGATTATTAGCTACTGGCTCTGTAGATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGTCTTTGCATAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTATCGAATCCCGTAGTTTCTCCAAAAGGGAATCATTTCCATGATATTACTAGCCAACCCGAGGAGCTAGCAAATACCAACCAAATTGAGCGTGGGGACCTTACGTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGCGATTCGTTGCCAGAATGATACGTCTCGAAATGACACTATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAGTTCAGCAAAAAGAAGGACAACAATGGCTCATCCATGTCAGCAGACAAAGTTCATTCTTATGGAAACTCTGACAAGGACGGTAAACCAGAATCTTCCTTGGTGGATGATACTTGTACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTCTAGGCCCAACTAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAATATATATCTACGACGAGCGAGATGAAGCTAAATGGTATTATAAATGGCGGAGGTTACATGTGCGGATGTTCAATATGCAATTTTACAGCTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTTAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATATATAGCGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCGGGTTCAGCTGTTAACATGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAAATATTGAAGTGGAAAATGATGTTGCGAAGCTTCCTAAATTGTCACATCCCATTGAGAGAGCGAACCCTAATTTCTCCAACCCAGTCCTGCATCAGAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTGCTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTCTGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACAAATGGCCTTACACTTCATGATATTGCCATTTCCTTAGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATATTCTGTGATCGCTGCCCTCGAGCTTTCCATACAGGCTGTCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAAAGATAAAGTGGGTTCCAATTCGAAGGTTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTTTTTAGGTTGACAAGAGTTGTTAAAGCACCTGAGTATGAGATTGGTGGCTGTGTTGTTTGCAGGCGACACGATTTCAGTGCTGCTAAGTTTGATGATCGTACAGTACTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTCGCTCTTCAGAATACTGTTTTGAATGGGGCACAGATAATTCCAGATTCATTGTCTGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTTTTAGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTCGATCCCATTGTTGCAAAATCAGGTCGTGATCTGATACCTGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTCTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTCGGATATTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCCGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATAAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACGTCAATGCTAGAGAAAGTGGTGCAGCAATCGACGATATAACGTTGTGTCATGATTGGTGCGCATGTCTCTATTGAAATAATTCCAAGTTAGGTTCTCCTCGGAAGGAAGGGTTTTAGCTGAAAGTTGGGAATTATATATATATTTTTAATTTCATTATTTTCCCCTTTTAATGTCCTCCATAGCAAATAGTTGTGATGTATAAATTGCCTGCGAGTTTTGATTTCGACTGGCAGCCTGAAGAAACAGAAGGTTGTTCTGTTTGTACAAACTAGAAATTAGATAGCTAACTAATTGGAGGGGCGCAACTGAAGAAAGAGAGAGAGAAAAAAGAAAAAAGAAAAAAAAGAAAAAATTTTGCATGCTGACCTTTTATCATGCATGCTGGAGATCTCTCACTTTGTTTTTCTGTTGTTTTTGACTTTGGATTGATCATATATTTCATGTAGTTCTTCCAAAAGTGTAAAAAAGAATAATAGAAAAAAAGCCTGAAAATGCCAGATTGTGTTGCTGTTGCGGACATAGGCCAAACTTTGGAAGAAGGCTGTTTTTGCCTTTGCCTGTTGCCACTAAATTTTAACTACACATAAATTTTCATCTCA 3579 41.6 MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEVSNPVVSPKGNHFHDITSQPEELANTNQIERGDLTSACSGNSSSEDISSDAIRCQNDTSRNDTMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNNGSSMSADKVHSYGNSDKDGKPESSLVDDTCTETSAHSWEGCAESSRYPLGPTKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEMKLNGIINGGGYMCGCSICNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSAVNMDSFEAWKASFHQNSANIEVENDVAKLPKLSHPIERANPNFSNPVLHQKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWSCPNCKDKVGSNSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGFLVDEALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLIKYMREVQLTIFNGTSMLEKVVQQSTI 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 61072424 61080500 - XM_039048639.1 Bhi11g02231 50943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g02231 841 MobiDBLite consensus disorder prediction 1 75 - -
Bhi11g02231 841 Pfam PHD-finger 490 532 IPR019787 -
Bhi11g02231 841 ProSitePatterns Zinc finger PHD-type signature. 491 530 IPR019786 -
Bhi11g02231 841 SUPERFAMILY FYVE/PHD zinc finger 486 533 IPR011011 -
Bhi11g02231 841 SMART PHD_3 490 531 IPR001965 -
Bhi11g02231 841 SMART PHD_3 569 626 IPR001965 -
Bhi11g02231 841 Gene3D - 672 836 - -
Bhi11g02231 841 Pfam Tify domain binding domain 257 311 IPR032308 -
Bhi11g02231 841 Pfam Tify domain binding domain 424 473 IPR032308 -
Bhi11g02231 841 MobiDBLite consensus disorder prediction 57 75 - -
Bhi11g02231 841 ProSiteProfiles Zinc finger PHD-type profile. 567 628 IPR019787 -
Bhi11g02231 841 MobiDBLite consensus disorder prediction 156 188 - -
Bhi11g02231 841 MobiDBLite consensus disorder prediction 21 56 - -
Bhi11g02231 841 ProSitePatterns Zinc finger PHD-type signature. 570 625 IPR019786 -
Bhi11g02231 841 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 364 838 - -
Bhi11g02231 841 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 33 357 - -
Bhi11g02231 841 ProSiteProfiles Zinc finger PHD-type profile. 488 533 IPR019787 -
Bhi11g02231 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 479 551 IPR013083 -
Bhi11g02231 841 MobiDBLite consensus disorder prediction 170 184 - -
Bhi11g02231 841 PANTHER AUTOIMMUNE REGULATOR 364 838 - -
Bhi11g02231 841 PANTHER AUTOIMMUNE REGULATOR 33 357 - -
Bhi11g02231 841 SUPERFAMILY FYVE/PHD zinc finger 568 623 IPR011011 -
Bhi11g02231 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 568 628 IPR013083 -
Bhi11g02231 841 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 725 813 IPR016181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g02231 - - - csv:101207817 1590.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00666 Bhi-Chr10:14678227 Bhi11g02231 Bhi-Chr11:61072424 1.88E-44 dispersed
Bhi11g02231 Bhi-Chr11:61072424 Bhi10g00825 Bhi-Chr10:16634746 3.76E-44 dispersed
Bhi11g02230 Bhi-Chr11:61072424 Bhi11g02231 Bhi-Chr11:61072424 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g02231 . 18 836 PHD Transcription Factor Family AT3G53680 53.9 8.4e-253 870.9
Bhi11g02230 . 18 813 PHD Transcription Factor Family AT3G53680 52.6 8.1e-240 827.8
Bhi07g00927 . 436 565 PHD Transcription Factor Family AT3G53680 54.6 1.8e-37 155.6
Bhi10g00666 . 343 468 PHD Transcription Factor Family AT3G53680 53.5 4.4e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2480 PF16135 TDBD 5.30E-12 No_clan Bhi TR