Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bhi11g02323	ATCTCTATAAATCCCTTTCTTCTCATTTCGTATCAAGTCAAAACTTCAATTTTGCCGATTTTAAAAAACCTGCGCGCTCTTTTTCCTCTGTCTCTCGTTGTTCGATCGATTCGATTGCCATTTCCGGTGAACTCTCCGATCGCTCAATCAGATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCCGTGATTCAGGTACTGTCTGAAGGCAACGGAGTCATATTCGGTAAATCAACAGATGACAACCAGATTACTGTCAAAGGTTCCCCACCCTTTCCTCTTTCGAAGTTTGTTGAGGTGATTGGAATTGCTGATACTGACAAGTCCATACGAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGATACATCTACCTTCAATCAACTATGTCAGCTTGCTAATGGAGAGTTCAAACACTTGTTTATCTGATTTTCAAGCCAGTCATTCTTTAGCAAGAAAGCTCATGCTCTAACTTCCCCTCTCGTGGCACACTAAGTCGCCAATATTTTCTTCATGTTCTTCAGAAGCGTCCGAGATTTACCGTTCATTTGGTATTGAACTTTTCAGGTAAGGAATATATAGAAATTGAATATGCAATGTATGTTTGTATTAGAATATATGTTTGTATTAGAATATACTAGAATGAACATTGCTTCAAAATATTCATCACAGATCTATTTTAATCAGTTTTGTTGTAGTCTTTTTAGGTTGTTATGAAGTATAAACCTCTGTGAATGCAAATAAACTGCAAACCGAATTTCAAAATGCTA	813	37.52	MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVIFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKHLFI	106

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
11	63086477	63089430	-	XM_039049495.1	Bhi11g02323	51035

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bhi11g02323	106	Gene3D	-	1	106	IPR012340	-
Bhi11g02323	106	SUPERFAMILY	Nucleic acid-binding proteins	5	105	IPR012340	-
Bhi11g02323	106	CDD	RPA3	6	98	-	-
Bhi11g02323	106	PANTHER	REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED	1	106	-	-
Bhi11g02323	106	PANTHER	REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED	1	106	-	-
Bhi11g02323	106	Pfam	Replication factor A protein 3	1	102	IPR013970	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bhi11g02323	K10740	RPA3; replication factor A3	-	csv:101203835	203.756

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bhi07g00702	Bhi-Chr7:26646979	Bhi11g02323	Bhi-Chr11:63086477	3.22E-46	dispersed
	Bhi07g00703	Bhi-Chr7:26647083	Bhi11g02323	Bhi-Chr11:63086477	3.22E-46	dispersed

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi8g979	.	.	.	.	.	.	.	.	Cmo06g00481	Cmo14g00311	.	.	.	.	.	.	Cpe08g01008	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cme04g02390	.	.	.	.	.	.	.	.	Sed02g0517	.	.	Cma06g00480	Cma14g00318	Car06g00423	Car14g00290	Cpe03g00275	.	Bhi11g02323	Tan08g1714	.	.	.	.	.	Cla10g01795	Cam10g1852	Cec10g1906	Cco10g1878	Clacu10g1867	Cmu10g2618	Cre10g2006	Lsi03g01885	Csa03g03429	Chy04g01921	.

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Bhi06g00279	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00277	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00275	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00278	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00274	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00276	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00271	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00282	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00270	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00280	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00273	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00272	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00269	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00283	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00281	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00284	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00267	.	105	801	Core DNA Replication Machinery Family	AT4G14700	66.4	4.3e-270	928.3
Bhi06g00268	.	105	768	Core DNA Replication Machinery Family	AT4G14700	64.3	6.8e-244	841.3
Bhi06g00279	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00277	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00275	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00278	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00274	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00276	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00271	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00282	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00270	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00280	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00273	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00272	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00269	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00283	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00281	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00284	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00267	.	105	801	Core DNA Replication Machinery Family	AT4G12620	68.1	3.9e-279	958.4
Bhi06g00268	.	105	768	Core DNA Replication Machinery Family	AT4G12620	65.9	6.2e-253	871.3
Bhi04g00329	.	2	362	Core DNA Replication Machinery Family	AT2G37560	65.1	2.3e-140	496.1
Bhi07g00500	.	9	418	Core DNA Replication Machinery Family	AT2G01120	65.0	6.9e-155	544.7
Bhi07g00501	.	9	418	Core DNA Replication Machinery Family	AT2G01120	65.0	6.9e-155	544.7
Bhi07g00499	.	9	418	Core DNA Replication Machinery Family	AT2G01120	65.0	6.9e-155	544.7
Bhi07g00502	.	9	362	Core DNA Replication Machinery Family	AT2G01120	67.0	1.6e-135	480.3
Bhi12g01864	.	3	536	Core DNA Replication Machinery Family	AT4G29910	58.2	2.6e-173	606.3
Bhi12g01863	.	3	536	Core DNA Replication Machinery Family	AT4G29910	58.2	2.6e-173	606.3
Bhi06g00870	.	1	283	Core DNA Replication Machinery Family	AT1G26840	66.3	4.9e-96	348.6
Bhi05g02013	.	5	804	Core DNA Replication Machinery Family	AT1G79150	59.2	1.8e-247	853.2
Bhi11g01474	.	8	940	Core DNA Replication Machinery Family	AT1G44900	75.2	0.0e+00	1351.7
Bhi03g00062	.	1	575	Core DNA Replication Machinery Family	AT5G46280	80.9	4.8e-268	921.0
Bhi05g01792	.	1	845	Core DNA Replication Machinery Family	AT2G16440	76.2	0.0e+00	1151.7
Bhi05g01791	.	1	827	Core DNA Replication Machinery Family	AT2G16440	75.1	0.0e+00	1125.2
Bhi06g01859	.	1	735	Core DNA Replication Machinery Family	AT2G07690	78.4	0.0e+00	1117.8
Bhi09g00842	.	4	722	Core DNA Replication Machinery Family	AT4G02060	85.4	0.0e+00	1221.1
Bhi10g00804	.	31	520	Core DNA Replication Machinery Family	AT2G29680	59.2	2.7e-161	566.2
Bhi10g00804	.	31	481	Core DNA Replication Machinery Family	AT1G07270	57.3	3.1e-140	496.1
Bhi09g01348	.	1	593	Core DNA Replication Machinery Family	AT3G25100	75.7	8.8e-257	883.6
Bhi11g02141	.	12	792	Core DNA Replication Machinery Family	AT3G09660	73.0	0.0e+00	1098.2
Bhi11g02143	.	4	691	Core DNA Replication Machinery Family	AT3G09660	77.1	6.6e-300	1027.3
Bhi11g02142	.	12	760	Core DNA Replication Machinery Family	AT3G09660	69.4	4.3e-299	1024.6
Bhi05g00892	.	16	639	Core DNA Replication Machinery Family	AT2G14050	78.1	2.0e-286	982.2
Bhi05g00890	.	16	654	Core DNA Replication Machinery Family	AT2G14050	76.3	2.1e-283	972.2
Bhi05g00891	.	16	640	Core DNA Replication Machinery Family	AT2G14050	76.2	4.4e-278	954.5
Bhi10g01853	.	1	410	Core DNA Replication Machinery Family	AT2G20980	55.2	1.0e-115	414.5
Bhi09g02713	.	7	969	Core DNA Replication Machinery Family	AT1G77320	50.1	4.2e-259	892.1
Bhi09g00040	.	1	200	Core DNA Replication Machinery Family	AT1G80190	66.3	9.8e-75	277.3
Bhi11g01039	.	1	145	Core DNA Replication Machinery Family	AT3G12530	73.8	1.2e-61	233.4
Bhi11g01040	.	1	145	Core DNA Replication Machinery Family	AT3G12530	73.8	1.2e-61	233.4
Bhi11g01038	.	1	145	Core DNA Replication Machinery Family	AT3G12530	73.8	1.2e-61	233.4
Bhi11g01041	.	10	113	Core DNA Replication Machinery Family	AT3G12530	76.0	6.7e-44	174.5
Bhi04g02308	.	5	188	Core DNA Replication Machinery Family	AT1G19080	67.9	6.7e-70	261.2
Bhi04g02307	.	5	188	Core DNA Replication Machinery Family	AT1G19080	67.9	6.7e-70	261.2
Bhi04g02308	.	5	188	Core DNA Replication Machinery Family	AT3G55490	67.9	6.7e-70	261.2
Bhi04g02307	.	5	188	Core DNA Replication Machinery Family	AT3G55490	67.9	6.7e-70	261.2
Bhi10g02136	.	1	1552	Core DNA Replication Machinery Family	AT5G67100	60.0	0.0e+00	1758.8
Bhi04g01666	.	2	623	Core DNA Replication Machinery Family	AT1G67630	59.2	3.1e-204	709.1
Bhi12g02443	.	1	447	Core DNA Replication Machinery Family	AT1G67320	65.3	3.7e-184	642.1
Bhi06g00131	.	7	450	Core DNA Replication Machinery Family	AT5G41880	65.0	4.9e-175	611.7
Bhi03g01767	.	1	1086	Core DNA Replication Machinery Family	AT5G63960	80.6	0.0e+00	1793.9
Bhi11g02542	.	1	438	Core DNA Replication Machinery Family	AT2G42120	75.1	1.1e-203	706.8
Bhi11g02541	.	1	458	Core DNA Replication Machinery Family	AT2G42120	71.8	3.3e-200	695.3
Bhi11g02540	.	1	439	Core DNA Replication Machinery Family	AT2G42120	72.0	1.3e-191	666.8
Bhi12g02443	.	1	447	Core DNA Replication Machinery Family	AT1G67320	65.3	3.7e-184	642.1
Bhi12g00555	.	1	127	Core DNA Replication Machinery Family	AT1G09815	61.5	6.6e-37	151.0
Bhi10g00062	.	1	2096	Core DNA Replication Machinery Family	AT1G08260	71.1	0.0e+00	2967.6
Bhi10g00064	.	1	1984	Core DNA Replication Machinery Family	AT1G08260	72.4	0.0e+00	2875.9
Bhi10g00063	.	1	1679	Core DNA Replication Machinery Family	AT1G08260	69.1	0.0e+00	2278.8
Bhi10g00062	.	25	2203	Core DNA Replication Machinery Family	AT2G27120	67.9	0.0e+00	2937.9
Bhi10g00064	.	25	1984	Core DNA Replication Machinery Family	AT2G27120	69.3	0.0e+00	2710.3
Bhi10g00063	.	1	1786	Core DNA Replication Machinery Family	AT2G27120	65.7	0.0e+00	2289.6
Bhi08g01976	.	7	487	Core DNA Replication Machinery Family	AT5G22110	70.1	8.0e-195	677.6
Bhi10g00207	.	1	922	Core DNA Replication Machinery Family	AT5G22010	63.5	2.1e-310	1062.4
Bhi10g00210	.	1	922	Core DNA Replication Machinery Family	AT5G22010	63.5	2.1e-310	1062.4
Bhi10g00208	.	1	921	Core DNA Replication Machinery Family	AT5G22010	63.4	1.1e-309	1060.1
Bhi10g00209	.	1	891	Core DNA Replication Machinery Family	AT5G22010	61.0	2.6e-292	1002.3
Bhi11g00361	.	1	331	Core DNA Replication Machinery Family	AT1G63160	91.0	5.8e-173	604.4
Bhi03g02358	.	171	503	Core DNA Replication Machinery Family	AT5G27740	82.3	6.0e-160	561.2
Bhi09g02708	.	1	334	Core DNA Replication Machinery Family	AT1G21690	82.1	1.7e-153	539.7
Bhi04g01892	.	1	363	Core DNA Replication Machinery Family	AT1G77470	76.1	1.6e-155	546.6
Bhi06g01594	.	26	618	Core DNA Replication Machinery Family	AT2G06510	68.5	1.5e-251	866.3
Bhi06g01595	.	26	618	Core DNA Replication Machinery Family	AT2G06510	68.5	1.5e-251	866.3
Bhi06g01596	.	26	618	Core DNA Replication Machinery Family	AT2G06510	68.5	1.5e-251	866.3
Bhi11g00244	.	32	703	Core DNA Replication Machinery Family	AT2G06510	50.3	1.1e-193	674.1
Bhi11g00248	.	1	353	Core DNA Replication Machinery Family	AT2G06510	60.0	1.1e-132	471.5
Bhi02g00093	.	1	623	Core DNA Replication Machinery Family	AT5G08020	67.3	1.9e-246	849.4
Bhi11g00244	.	10	812	Core DNA Replication Machinery Family	AT5G45400	51.7	4.7e-227	785.4
Bhi11g00248	.	1	462	Core DNA Replication Machinery Family	AT5G45400	61.4	2.4e-162	570.5
Bhi02g00093	.	10	618	Core DNA Replication Machinery Family	AT5G61000	67.4	1.5e-243	839.7
Bhi11g00244	.	5	798	Core DNA Replication Machinery Family	AT4G19130	54.8	8.7e-228	787.7
Bhi11g00248	.	1	448	Core DNA Replication Machinery Family	AT4G19130	61.3	3.4e-155	546.6
Bhi02g00753	.	1	224	Core DNA Replication Machinery Family	AT3G02920	51.3	4.7e-57	218.8
Bhi11g02323	.	1	106	Core DNA Replication Machinery Family	AT4G18590	66.0	1.5e-37	152.9
Bhi02g02229	.	1	404	Core DNA Replication Machinery Family	AT5G26680	83.0	4.2e-189	658.3
Bhi02g02228	.	1	376	Core DNA Replication Machinery Family	AT5G26680	86.5	3.7e-185	645.2
Bhi01g00125	.	1	1106	Core DNA Replication Machinery Family	AT1G08840	53.5	3.5e-301	1031.9
Bhi01g00124	.	1	1106	Core DNA Replication Machinery Family	AT1G08840	53.5	3.5e-301	1031.9
Bhi01g02687	.	1	297	Core DNA Replication Machinery Family	AT2G25100	67.3	4.6e-115	411.8
Bhi10g00145	.	1	804	Core DNA Replication Machinery Family	AT1G08130	66.3	1.5e-296	1016.1
Bhi10g00144	.	1	765	Core DNA Replication Machinery Family	AT1G08130	62.9	4.3e-275	944.9
Bhi10g00145	.	204	804	Core DNA Replication Machinery Family	AT1G49250	68.8	3.4e-241	832.0
Bhi10g00144	.	204	765	Core DNA Replication Machinery Family	AT1G49250	64.6	5.6e-220	761.5

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0003557	1	3	1	1	1	1	3	2	0	0	1	1	1	2	1	2	1	0	2	1	2	1	2	1	2	1	2	5	4	2	47