Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g02541 AAAAGTTTTTGAGATTTGAGTTATTTTGTTAAATTTCCATTCTATTTTCCCCCATTTTGGTTCGAAAGAGTAAACTTTCTCTGTTCATTCTCTCCCTCGCCATGGAAATCGATTCACTGAAGAATCTCCAGCGCAAACAGTGTACCTATGAAATATTGGATGAGCAGTACAAGATTCAGAAGGAGACATACAAGGGCCAGCAGTACAGTCACATATACTTTGCTCGACTCCACTTGATGAGAACGATACTCCATTCGCTTGTCTCTAAGTGGAAACCTCATTTACCTGTTTGCACTGTATTGGGATTGGAGGAAGGCAAGGAATGTGTCATTGTTGGAACCGTCTACAAGCACATGAAACTTAAACCTACCATTCTGGACGAGTATTCAAAGGAGAGATCTGCCAACCCACTTGTTAGGCCACACAACTTTATGCACCCAGATGATCATCTAGTATTGGAAGATGAAAGTGGGAGAGTAAAGCTTTCTGGGGCTGTGCTTTTACCTTCTGTATATGTTACAGGGATTGTCCTTGCATTGCGTGGAAAGGAAACTTGCGTTGGTGACTTTTTGGTTTTAGACATCCTAGAAGCTGGCTTGCCACCCCAGATAGAGCGGCCACTCATATCAATACATGAGGGACAAAGATGCTCTGTTGCAAAGTTTCTTATAAAGGTTCAAATGCATGCAGGCGAAGATAAGTATGTGATTTTTGTCTCGGGCATAAGTATTGGGAGTAGCATCTCTAATCCTCTACAGTTTCAGCTCCTTGTTGATCATATAACAGGGCATTTAGGAGATGAGAAGGAACAAGGGATTGCGGCTCAAATAGTTCATGTTGTCATTTGTGGGAATTCTGTTGAAATTCCTCGAGGAATTTTAAATGGGCAGCATTTGTCTGCAAAGGACCAAACAAAGCTGACAGAACCTCTTAAAGAGCTAGATATCCTATTGAATCAGATTGCTGTGGGTTTACCTGTGGACATCATGCCGGGTTCCAGTGACCCAGCCAATTTTTCCTTGCCTCAGCAGCCTTTGCACAGATGTCTTTCTCCTGGATCATCAGCTTATAACACTTTCAGATCTTGCACCAACCCTCATTGTTTTGAGCTTGATAATTTCAGGTTTCTTGGAACATCAGGTCAGAATATAGATGATCTCGAGAAGTACTCAGAGGCTAAAGATAAACTTGAATTTATGGAGAGGACTTTGAGATGGAGGCATCTGGCACCAACTGCTCCAAATACTCTCGGTTGTTACCCATTCACTGACCGAGATCCTTTCCTGATTGAGAGTTGTCCTCATGTATATTTTATTGGCAATCAGGACAAGTTTGATACTCGCTTAATAAAGGGCGCTGAAGGGCAGATGGTAAGACTCATTGCGATTCCAAGATTTTGCGAGAACGGGGTTGCCGTAATGCTTAACTTGAGAAACCTTGAATGCCACACACTGAGTTTTGGGACTGAATTCAGCTGATCATCGTGACGAACGAAACCAGAAGGAGATCGAGAACCTGGTTTCGCATTCGGTTTATGTTGCTTTTGCAGGAAACCGATTTCTCTAAAATTACCTGCTTCTAAAAAAGTGGAGCAAATGTGCCCTCTAATGGAAATTTTAGAGGTTTGTATATGGTGTGAAAAGGGTTTTTGCAGTGAAATGCAGAATCGTCTCCATTTTCTCAACAGTGGATCACATCTTCTGGGGAGAATCACTTTGGAGAGGAAGAGTAAATCAAAAGAACTGATGGGTGAGTGAGAATAGTCATCCTCTGTATTAACTGGTTTTGGTTCATGTAGGTCCTGCCCCAACAGTGTAGAAATTTGTAGTTTGGCTGGCATTGTTGGGTTCAGAGTTGTATGTTCCATAGTAACCTATGCCTTCACTTGGTTGTAACACTGATGATGCCTGACTTCTAATATATTAGTTTGTGTTCTGAGTGGTTGGTGCTTGTGTATTATTTTTAGTGTCGAAAATGTATAACTATGAAATATTAGCTTGGGAATGAC 2008 41.58 MEIDSLKNLQRKQCTYEILDEQYKIQKETYKGQQYSHIYFARLHLMRTILHSLVSKWKPHLPVCTVLGLEEGKECVIVGTVYKHMKLKPTILDEYSKERSANPLVRPHNFMHPDDHLVLEDESGRVKLSGAVLLPSVYVTGIVLALRGKETCVGDFLVLDILEAGLPPQIERPLISIHEGQRCSVAKFLIKVQMHAGEDKYVIFVSGISIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPRGILNGQHLSAKDQTKLTEPLKELDILLNQIAVGLPVDIMPGSSDPANFSLPQQPLHRCLSPGSSAYNTFRSCTNPHCFELDNFRFLGTSGQNIDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFIGNQDKFDTRLIKGAEGQMVRLIAIPRFCENGVAVMLNLRNLECHTLSFGTEFS 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 68564981 68571574 - XM_039050296.1 Bhi11g02541 51253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g02541 458 Gene3D - 40 164 - -
Bhi11g02541 458 Pfam DNA polymerase delta subunit OB-fold domain 34 161 IPR040663 -
Bhi11g02541 458 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 7 453 IPR024826 -
Bhi11g02541 458 Gene3D - 178 457 - -
Bhi11g02541 458 CDD MPP_PolD2_C 201 453 IPR041863 -
Bhi11g02541 458 Pfam DNA polymerase alpha/epsilon subunit B 202 412 IPR007185 GO:0003677|GO:0006260
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g02541 K02328 POLD2; DNA polymerase delta subunit 2 - csv:101221438 823.928
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g02540 Bhi-Chr11:68564981 Bhi11g02541 Bhi-Chr11:68564981 0 tandem
Bhi11g02541 Bhi-Chr11:68564981 Bhi11g02542 Bhi-Chr11:68564981 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1268 . . . . . Bpe03g01146 . Bma10g00174 . Cmo14g00422 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0534 Cone19ag0482 . . . Cme04g02239 Blo07g01274 . . Bda05g01086 . . . . Sed02g0364 . . . Cma14g00418 . Car14g00385 Cpe03g00370 . Bhi11g02541 Tan08g1499 Cmetu04g0761 . . . . Cla10g01668 Cam10g1715 Cec10g1767 Cco10g1734 Clacu10g1736 Cmu10g2486 Cre10g1868 Lsi03g01734 Csa03g03577 Chy04g01776 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g00279 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00277 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00275 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00278 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00274 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00276 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00271 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00282 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00270 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00280 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00273 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00272 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00269 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00283 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00281 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00284 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00267 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00268 . 105 768 Core DNA Replication Machinery Family AT4G14700 64.3 6.8e-244 841.3
Bhi06g00279 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00277 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00275 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00278 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00274 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00276 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00271 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00282 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00270 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00280 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00273 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00272 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00269 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00283 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00281 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00284 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00267 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00268 . 105 768 Core DNA Replication Machinery Family AT4G12620 65.9 6.2e-253 871.3
Bhi04g00329 . 2 362 Core DNA Replication Machinery Family AT2G37560 65.1 2.3e-140 496.1
Bhi07g00500 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 6.9e-155 544.7
Bhi07g00501 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 6.9e-155 544.7
Bhi07g00499 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 6.9e-155 544.7
Bhi07g00502 . 9 362 Core DNA Replication Machinery Family AT2G01120 67.0 1.6e-135 480.3
Bhi12g01864 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.2 2.6e-173 606.3
Bhi12g01863 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.2 2.6e-173 606.3
Bhi06g00870 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.3 4.9e-96 348.6
Bhi05g02013 . 5 804 Core DNA Replication Machinery Family AT1G79150 59.2 1.8e-247 853.2
Bhi11g01474 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1351.7
Bhi03g00062 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.9 4.8e-268 921.0
Bhi05g01792 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1151.7
Bhi05g01791 . 1 827 Core DNA Replication Machinery Family AT2G16440 75.1 0.0e+00 1125.2
Bhi06g01859 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1117.8
Bhi09g00842 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.4 0.0e+00 1221.1
Bhi10g00804 . 31 520 Core DNA Replication Machinery Family AT2G29680 59.2 2.7e-161 566.2
Bhi10g00804 . 31 481 Core DNA Replication Machinery Family AT1G07270 57.3 3.1e-140 496.1
Bhi09g01348 . 1 593 Core DNA Replication Machinery Family AT3G25100 75.7 8.8e-257 883.6
Bhi11g02141 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1098.2
Bhi11g02143 . 4 691 Core DNA Replication Machinery Family AT3G09660 77.1 6.6e-300 1027.3
Bhi11g02142 . 12 760 Core DNA Replication Machinery Family AT3G09660 69.4 4.3e-299 1024.6
Bhi05g00892 . 16 639 Core DNA Replication Machinery Family AT2G14050 78.1 2.0e-286 982.2
Bhi05g00890 . 16 654 Core DNA Replication Machinery Family AT2G14050 76.3 2.1e-283 972.2
Bhi05g00891 . 16 640 Core DNA Replication Machinery Family AT2G14050 76.2 4.4e-278 954.5
Bhi10g01853 . 1 410 Core DNA Replication Machinery Family AT2G20980 55.2 1.0e-115 414.5
Bhi09g02713 . 7 969 Core DNA Replication Machinery Family AT1G77320 50.1 4.2e-259 892.1
Bhi09g00040 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.3 9.8e-75 277.3
Bhi11g01039 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.8 1.2e-61 233.4
Bhi11g01040 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.8 1.2e-61 233.4
Bhi11g01038 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.8 1.2e-61 233.4
Bhi11g01041 . 10 113 Core DNA Replication Machinery Family AT3G12530 76.0 6.7e-44 174.5
Bhi04g02308 . 5 188 Core DNA Replication Machinery Family AT1G19080 67.9 6.7e-70 261.2
Bhi04g02307 . 5 188 Core DNA Replication Machinery Family AT1G19080 67.9 6.7e-70 261.2
Bhi04g02308 . 5 188 Core DNA Replication Machinery Family AT3G55490 67.9 6.7e-70 261.2
Bhi04g02307 . 5 188 Core DNA Replication Machinery Family AT3G55490 67.9 6.7e-70 261.2
Bhi10g02136 . 1 1552 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1758.8
Bhi04g01666 . 2 623 Core DNA Replication Machinery Family AT1G67630 59.2 3.1e-204 709.1
Bhi12g02443 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.3 3.7e-184 642.1
Bhi06g00131 . 7 450 Core DNA Replication Machinery Family AT5G41880 65.0 4.9e-175 611.7
Bhi03g01767 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1793.9
Bhi11g02542 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.1 1.1e-203 706.8
Bhi11g02541 . 1 458 Core DNA Replication Machinery Family AT2G42120 71.8 3.3e-200 695.3
Bhi11g02540 . 1 439 Core DNA Replication Machinery Family AT2G42120 72.0 1.3e-191 666.8
Bhi12g02443 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.3 3.7e-184 642.1
Bhi12g00555 . 1 127 Core DNA Replication Machinery Family AT1G09815 61.5 6.6e-37 151.0
Bhi10g00062 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.1 0.0e+00 2967.6
Bhi10g00064 . 1 1984 Core DNA Replication Machinery Family AT1G08260 72.4 0.0e+00 2875.9
Bhi10g00063 . 1 1679 Core DNA Replication Machinery Family AT1G08260 69.1 0.0e+00 2278.8
Bhi10g00062 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.9 0.0e+00 2937.9
Bhi10g00064 . 25 1984 Core DNA Replication Machinery Family AT2G27120 69.3 0.0e+00 2710.3
Bhi10g00063 . 1 1786 Core DNA Replication Machinery Family AT2G27120 65.7 0.0e+00 2289.6
Bhi08g01976 . 7 487 Core DNA Replication Machinery Family AT5G22110 70.1 8.0e-195 677.6
Bhi10g00207 . 1 922 Core DNA Replication Machinery Family AT5G22010 63.5 2.1e-310 1062.4
Bhi10g00210 . 1 922 Core DNA Replication Machinery Family AT5G22010 63.5 2.1e-310 1062.4
Bhi10g00208 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.4 1.1e-309 1060.1
Bhi10g00209 . 1 891 Core DNA Replication Machinery Family AT5G22010 61.0 2.6e-292 1002.3
Bhi11g00361 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 5.8e-173 604.4
Bhi03g02358 . 171 503 Core DNA Replication Machinery Family AT5G27740 82.3 6.0e-160 561.2
Bhi09g02708 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 1.7e-153 539.7
Bhi04g01892 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 1.6e-155 546.6
Bhi06g01594 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 1.5e-251 866.3
Bhi06g01595 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 1.5e-251 866.3
Bhi06g01596 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 1.5e-251 866.3
Bhi11g00244 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.3 1.1e-193 674.1
Bhi11g00248 . 1 353 Core DNA Replication Machinery Family AT2G06510 60.0 1.1e-132 471.5
Bhi02g00093 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.3 1.9e-246 849.4
Bhi11g00244 . 10 812 Core DNA Replication Machinery Family AT5G45400 51.7 4.7e-227 785.4
Bhi11g00248 . 1 462 Core DNA Replication Machinery Family AT5G45400 61.4 2.4e-162 570.5
Bhi02g00093 . 10 618 Core DNA Replication Machinery Family AT5G61000 67.4 1.5e-243 839.7
Bhi11g00244 . 5 798 Core DNA Replication Machinery Family AT4G19130 54.8 8.7e-228 787.7
Bhi11g00248 . 1 448 Core DNA Replication Machinery Family AT4G19130 61.3 3.4e-155 546.6
Bhi02g00753 . 1 224 Core DNA Replication Machinery Family AT3G02920 51.3 4.7e-57 218.8
Bhi11g02323 . 1 106 Core DNA Replication Machinery Family AT4G18590 66.0 1.5e-37 152.9
Bhi02g02229 . 1 404 Core DNA Replication Machinery Family AT5G26680 83.0 4.2e-189 658.3
Bhi02g02228 . 1 376 Core DNA Replication Machinery Family AT5G26680 86.5 3.7e-185 645.2
Bhi01g00125 . 1 1106 Core DNA Replication Machinery Family AT1G08840 53.5 3.5e-301 1031.9
Bhi01g00124 . 1 1106 Core DNA Replication Machinery Family AT1G08840 53.5 3.5e-301 1031.9
Bhi01g02687 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.3 4.6e-115 411.8
Bhi10g00145 . 1 804 Core DNA Replication Machinery Family AT1G08130 66.3 1.5e-296 1016.1
Bhi10g00144 . 1 765 Core DNA Replication Machinery Family AT1G08130 62.9 4.3e-275 944.9
Bhi10g00145 . 204 804 Core DNA Replication Machinery Family AT1G49250 68.8 3.4e-241 832.0
Bhi10g00144 . 204 765 Core DNA Replication Machinery Family AT1G49250 64.6 5.6e-220 761.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005225 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 8 1 1 39