Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g02542 AAAAGTTTTTGAGATTTGAGTTATTTTGTTAAATTTCCATTCTATTTTCCCCCATTTTGGTTCGAAAGAGTAAACTTTCTCTGTTCATTCTCTCCCTCGCCATGGAAATCGATTCACTGAAGAATCTCCAGCGCAAACAGTGTACCTATGAAATATTGGATGAGCAGTACAAGATTCAGAAGGAGACATACAAGGGCCAGCAGTACAGTCACATATACTTTGCTCGACTCCACTTGATGAGAACGATACTCCATTCGCTTGTCTCTAAGTGGAAACCTCATTTACCTGTTTGCACTGTATTGGGATTGGAGGAAGGCAAGGAATGTGTCATTGTTGGAACCGTCTACAAGCACATGAAACTTAAACCTACCATTCTGGACGAGTATTCAAAGGAGAGATCTGCCAACCCACTTGTTAGGCCACACAACTTTATGCACCCAGATGATCATCTAGTATTGGAAGATGAAAGTGGGAGAGTAAAGCTTTCTGGGGCTGTGCTTTTACCTTCTGTATATGTTACAGGGATTGTCCTTGCATTGCGTGGAAAGGAAACTTGCGTTGGTGACTTTTTGGTTTTAGACATCCTAGAAGCTGGCTTGCCACCCCAGATAGAGCGGCCACTCATATCAAGCGAAGATAAGTATGTGATTTTTGTCTCGGGCATAAGTATTGGGAGTAGCATCTCTAATCCTCTACAGTTTCAGCTCCTTGTTGATCATATAACAGGGCATTTAGGAGATGAGAAGGAACAAGGGATTGCGGCTCAAATAGTTCATGTTGTCATTTGTGGGAATTCTGTTGAAATTCCTCGAGGAATTTTAAATGGGCAGCATTTGTCTGCAAAGGACCAAACAAAGCTGACAGAACCTCTTAAAGAGCTAGATATCCTATTGAATCAGATTGCTGTGGGTTTACCTGTGGACATCATGCCGGGTTCCAGTGACCCAGCCAATTTTTCCTTGCCTCAGCAGCCTTTGCACAGATGTCTTTCTCCTGGATCATCAGCTTATAACACTTTCAGATCTTGCACCAACCCTCATTGTTTTGAGCTTGATAATTTCAGGTTTCTTGGAACATCAGGTCAGAATATAGATGATCTCGAGAAGTACTCAGAGGCTAAAGATAAACTTGAATTTATGGAGAGGACTTTGAGATGGAGGCATCTGGCACCAACTGCTCCAAATACTCTCGGTTGTTACCCATTCACTGACCGAGATCCTTTCCTGATTGAGAGTTGTCCTCATGTATATTTTATTGGCAATCAGGACAAGTTTGATACTCGCTTAATAAAGGGCGCTGAAGGGCAGATGGTAAGACTCATTGCGATTCCAAGATTTTGCGAGAACGGGGTTGCCGTAATGCTTAACTTGAGAAACCTTGAATGCCACACACTGAGTTTTGGGACTGAATTCAGCTGATCATCGTGACGAACGAAACCAGAAGGAGATCGAGAACCTGGTTTCGCATTCGGTTTATGTTGCTTTTGCAGGAAACCGATTTCTCTAAAATTACCTGCTTCTAAAAAAGTGGAGCAAATGTGCCCTCTAATGGAAATTTTAGAGGTTTGTATATGGTGTGAAAAGGGTTTTTGCAGTGAAATGCAGAATCGTCTCCATTTTCTCAACAGTGGATCACATCTTCTGGGGAGAATCACTTTGGAGAGGAAGAGTAAATCAAAAGAACTGATGGGTGAGTGAGAATAGTCATCCTCTGTATTAACTGGTTTTGGTTCATGTAGGTCCTGCCCCAACAGTGTAGAAATTTGTAGTTTGGCTGGCATTGTTGGGTTCAGAGTTGTATGTTCCATAGTAACCTATGCCTTCACTTGGTTGTAACACTGATGATGCCTGACTTCTAATATATTAGTTTGTGTTCTGAGTGGTTGGTGCTTGTGTATTATTTTTAGTGTCGAAAATGTATAACTATGAAATATTAGCTTGGGAATGAC 1948 41.68 MEIDSLKNLQRKQCTYEILDEQYKIQKETYKGQQYSHIYFARLHLMRTILHSLVSKWKPHLPVCTVLGLEEGKECVIVGTVYKHMKLKPTILDEYSKERSANPLVRPHNFMHPDDHLVLEDESGRVKLSGAVLLPSVYVTGIVLALRGKETCVGDFLVLDILEAGLPPQIERPLISSEDKYVIFVSGISIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPRGILNGQHLSAKDQTKLTEPLKELDILLNQIAVGLPVDIMPGSSDPANFSLPQQPLHRCLSPGSSAYNTFRSCTNPHCFELDNFRFLGTSGQNIDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFIGNQDKFDTRLIKGAEGQMVRLIAIPRFCENGVAVMLNLRNLECHTLSFGTEFS 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 68564981 68571574 - XM_039050298.1 Bhi11g02542 51254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g02542 438 Gene3D - 169 437 - -
Bhi11g02542 438 CDD MPP_PolD2_C 181 433 IPR041863 -
Bhi11g02542 438 Gene3D - 40 164 - -
Bhi11g02542 438 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 7 433 IPR024826 -
Bhi11g02542 438 Pfam DNA polymerase alpha/epsilon subunit B 182 392 IPR007185 GO:0003677|GO:0006260
Bhi11g02542 438 Pfam DNA polymerase delta subunit OB-fold domain 34 161 IPR040663 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g02542 K02328 POLD2; DNA polymerase delta subunit 2 - csv:101221438 837.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g02540 Bhi-Chr11:68564981 Bhi11g02542 Bhi-Chr11:68564981 0 dispersed
Bhi11g02541 Bhi-Chr11:68564981 Bhi11g02542 Bhi-Chr11:68564981 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g00279 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00277 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00275 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00278 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00274 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00276 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00271 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00282 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00270 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00280 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00273 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00272 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00269 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00283 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00281 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00284 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00267 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00268 . 105 768 Core DNA Replication Machinery Family AT4G14700 64.3 6.8e-244 841.3
Bhi06g00279 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00277 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00275 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00278 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00274 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00276 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00271 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00282 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00270 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00280 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00273 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00272 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00269 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00283 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00281 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00284 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00267 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00268 . 105 768 Core DNA Replication Machinery Family AT4G12620 65.9 6.2e-253 871.3
Bhi04g00329 . 2 362 Core DNA Replication Machinery Family AT2G37560 65.1 2.3e-140 496.1
Bhi07g00500 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 6.9e-155 544.7
Bhi07g00501 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 6.9e-155 544.7
Bhi07g00499 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 6.9e-155 544.7
Bhi07g00502 . 9 362 Core DNA Replication Machinery Family AT2G01120 67.0 1.6e-135 480.3
Bhi12g01864 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.2 2.6e-173 606.3
Bhi12g01863 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.2 2.6e-173 606.3
Bhi06g00870 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.3 4.9e-96 348.6
Bhi05g02013 . 5 804 Core DNA Replication Machinery Family AT1G79150 59.2 1.8e-247 853.2
Bhi11g01474 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1351.7
Bhi03g00062 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.9 4.8e-268 921.0
Bhi05g01792 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1151.7
Bhi05g01791 . 1 827 Core DNA Replication Machinery Family AT2G16440 75.1 0.0e+00 1125.2
Bhi06g01859 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1117.8
Bhi09g00842 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.4 0.0e+00 1221.1
Bhi10g00804 . 31 520 Core DNA Replication Machinery Family AT2G29680 59.2 2.7e-161 566.2
Bhi10g00804 . 31 481 Core DNA Replication Machinery Family AT1G07270 57.3 3.1e-140 496.1
Bhi09g01348 . 1 593 Core DNA Replication Machinery Family AT3G25100 75.7 8.8e-257 883.6
Bhi11g02141 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1098.2
Bhi11g02143 . 4 691 Core DNA Replication Machinery Family AT3G09660 77.1 6.6e-300 1027.3
Bhi11g02142 . 12 760 Core DNA Replication Machinery Family AT3G09660 69.4 4.3e-299 1024.6
Bhi05g00892 . 16 639 Core DNA Replication Machinery Family AT2G14050 78.1 2.0e-286 982.2
Bhi05g00890 . 16 654 Core DNA Replication Machinery Family AT2G14050 76.3 2.1e-283 972.2
Bhi05g00891 . 16 640 Core DNA Replication Machinery Family AT2G14050 76.2 4.4e-278 954.5
Bhi10g01853 . 1 410 Core DNA Replication Machinery Family AT2G20980 55.2 1.0e-115 414.5
Bhi09g02713 . 7 969 Core DNA Replication Machinery Family AT1G77320 50.1 4.2e-259 892.1
Bhi09g00040 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.3 9.8e-75 277.3
Bhi11g01039 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.8 1.2e-61 233.4
Bhi11g01040 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.8 1.2e-61 233.4
Bhi11g01038 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.8 1.2e-61 233.4
Bhi11g01041 . 10 113 Core DNA Replication Machinery Family AT3G12530 76.0 6.7e-44 174.5
Bhi04g02308 . 5 188 Core DNA Replication Machinery Family AT1G19080 67.9 6.7e-70 261.2
Bhi04g02307 . 5 188 Core DNA Replication Machinery Family AT1G19080 67.9 6.7e-70 261.2
Bhi04g02308 . 5 188 Core DNA Replication Machinery Family AT3G55490 67.9 6.7e-70 261.2
Bhi04g02307 . 5 188 Core DNA Replication Machinery Family AT3G55490 67.9 6.7e-70 261.2
Bhi10g02136 . 1 1552 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1758.8
Bhi04g01666 . 2 623 Core DNA Replication Machinery Family AT1G67630 59.2 3.1e-204 709.1
Bhi12g02443 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.3 3.7e-184 642.1
Bhi06g00131 . 7 450 Core DNA Replication Machinery Family AT5G41880 65.0 4.9e-175 611.7
Bhi03g01767 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1793.9
Bhi11g02542 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.1 1.1e-203 706.8
Bhi11g02541 . 1 458 Core DNA Replication Machinery Family AT2G42120 71.8 3.3e-200 695.3
Bhi11g02540 . 1 439 Core DNA Replication Machinery Family AT2G42120 72.0 1.3e-191 666.8
Bhi12g02443 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.3 3.7e-184 642.1
Bhi12g00555 . 1 127 Core DNA Replication Machinery Family AT1G09815 61.5 6.6e-37 151.0
Bhi10g00062 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.1 0.0e+00 2967.6
Bhi10g00064 . 1 1984 Core DNA Replication Machinery Family AT1G08260 72.4 0.0e+00 2875.9
Bhi10g00063 . 1 1679 Core DNA Replication Machinery Family AT1G08260 69.1 0.0e+00 2278.8
Bhi10g00062 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.9 0.0e+00 2937.9
Bhi10g00064 . 25 1984 Core DNA Replication Machinery Family AT2G27120 69.3 0.0e+00 2710.3
Bhi10g00063 . 1 1786 Core DNA Replication Machinery Family AT2G27120 65.7 0.0e+00 2289.6
Bhi08g01976 . 7 487 Core DNA Replication Machinery Family AT5G22110 70.1 8.0e-195 677.6
Bhi10g00207 . 1 922 Core DNA Replication Machinery Family AT5G22010 63.5 2.1e-310 1062.4
Bhi10g00210 . 1 922 Core DNA Replication Machinery Family AT5G22010 63.5 2.1e-310 1062.4
Bhi10g00208 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.4 1.1e-309 1060.1
Bhi10g00209 . 1 891 Core DNA Replication Machinery Family AT5G22010 61.0 2.6e-292 1002.3
Bhi11g00361 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 5.8e-173 604.4
Bhi03g02358 . 171 503 Core DNA Replication Machinery Family AT5G27740 82.3 6.0e-160 561.2
Bhi09g02708 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 1.7e-153 539.7
Bhi04g01892 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 1.6e-155 546.6
Bhi06g01594 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 1.5e-251 866.3
Bhi06g01595 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 1.5e-251 866.3
Bhi06g01596 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 1.5e-251 866.3
Bhi11g00244 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.3 1.1e-193 674.1
Bhi11g00248 . 1 353 Core DNA Replication Machinery Family AT2G06510 60.0 1.1e-132 471.5
Bhi02g00093 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.3 1.9e-246 849.4
Bhi11g00244 . 10 812 Core DNA Replication Machinery Family AT5G45400 51.7 4.7e-227 785.4
Bhi11g00248 . 1 462 Core DNA Replication Machinery Family AT5G45400 61.4 2.4e-162 570.5
Bhi02g00093 . 10 618 Core DNA Replication Machinery Family AT5G61000 67.4 1.5e-243 839.7
Bhi11g00244 . 5 798 Core DNA Replication Machinery Family AT4G19130 54.8 8.7e-228 787.7
Bhi11g00248 . 1 448 Core DNA Replication Machinery Family AT4G19130 61.3 3.4e-155 546.6
Bhi02g00753 . 1 224 Core DNA Replication Machinery Family AT3G02920 51.3 4.7e-57 218.8
Bhi11g02323 . 1 106 Core DNA Replication Machinery Family AT4G18590 66.0 1.5e-37 152.9
Bhi02g02229 . 1 404 Core DNA Replication Machinery Family AT5G26680 83.0 4.2e-189 658.3
Bhi02g02228 . 1 376 Core DNA Replication Machinery Family AT5G26680 86.5 3.7e-185 645.2
Bhi01g00125 . 1 1106 Core DNA Replication Machinery Family AT1G08840 53.5 3.5e-301 1031.9
Bhi01g00124 . 1 1106 Core DNA Replication Machinery Family AT1G08840 53.5 3.5e-301 1031.9
Bhi01g02687 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.3 4.6e-115 411.8
Bhi10g00145 . 1 804 Core DNA Replication Machinery Family AT1G08130 66.3 1.5e-296 1016.1
Bhi10g00144 . 1 765 Core DNA Replication Machinery Family AT1G08130 62.9 4.3e-275 944.9
Bhi10g00145 . 204 804 Core DNA Replication Machinery Family AT1G49250 68.8 3.4e-241 832.0
Bhi10g00144 . 204 765 Core DNA Replication Machinery Family AT1G49250 64.6 5.6e-220 761.5