Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g02977 AAATTTCTCCACGCTGACACTTCACTCGTGTCTGATCTCTTTCTCTCTCTTTTTTGGATTTGATTTAAAAAATTAAAATAGCAAAAATAGAGGAAAAAAATAAAAAGAAAAAAAAAAACAGGGCAGAAATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGGAAGACGATTCCTCTTCCGGAGGCTTCTCCGGCCACTCCTCAGCTTCCATCTTCTTTACCTATTCTCACAGCCAGTGACAAGAACACCGCCGCTGTTAATCATGACCACGATTCTTCTTCTTCAAGCTTGTCACCGGAAGGTAATATCGATGGGGATGGTGAAGATCTGGAGGTCGATAAGGAGACTGTAAGAGAGAAATCAGGTGAAACTAAGCTGGAAGATGGGGATGGAGATGGAGATGGAGGCTTATCTGGTTCGACCGAAGAGTTTACAAATTCGGATACTTCTGCCATGAGATCGGATAATTCTAAAGTACTTTCTGGTGAGGAAAGTAATCCGTCGAGTACTACAAAGACTGATGAACAGAATGAAACAAGTAACTCGCAAGAGAAGACTCTTAAGAAACCCGACAAGATACTTCCGTGCCCCCGCTGTAACAGCATGGATACTAAGTTCTGTTACTATAATAACTACAATGTTAATCAACCGCGCCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGAGGGACAATGAGGAATGTTCCTGTGGGTGCAGGGCGTCGTAAGAACAAGAGTTCTGCCTCTCATCATCGTCAGATTATTGTTTCAGAAGCGCTTCAGCATGCTCGAACTGATGTTTCTAATGGTATTCATCATTCTACCCTGAAACCGAATGGCAATGGTAATGTATTGGCATTTGGTTCAGACGCCCCTCTTTGTGAATCAATGGCTTCCATTTTGAACATTGCTGATAAAACAAGGCAGAATAGTACTAGAAATGGCTTTCAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTATGAGAATGGTGAAAATGATGATCAGTCTCAGGAATCTGCTGCAACTCCATCATTTATAGATAATGAAGAAGGCAAGACTGGGCCACAAGATCAAGTGATTCATAATTGTCAAGGCTTTTTACCTCCTCAGATTCCATTTTTCCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCACCACAATGGAGCTCTCCTGTTCCACCTCCTACTTTCTATTCACCAGGCATTCCCATGCCATTCTATCCGACTGCCCCGTTTTGGGGTTGTACGGTTCCTGGCGCCTGGACCGTTCCATGGGTTACCCAGCCGCCATCTCTGAACCCTGTTGCCCAAAACCACGCTCCCAACTCTCCAACCTTGGGGAAACATTCAAGAGATGAGAATGTAACCAAGCAGAGCGATTTTGGGGGAGACGAGCAGCAGAAAGATAACAAAGCTGAGAGATGCCTTTGGATACCAAAAACGTTGAGAATCGACGACCCTGGTGAAGCAGCTAAAAGCTCCATATGGGCAACTTTAGGAATCAAGAATGACAAGACTGATCCAGTCAGTGAAGGGCTTTTCCAGGCTTTTCAATCAAAGAAGACCGACGAAAAGAATCGCAAAGCGGAAGCCTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCCAGATCAATCAAATTTCACGAAAGCTCGTAAATGGATACAACAATGCTTTTCCCCGAACGTGCCATCAAAGTGTTCGCTGCAGCCCATATGGATGGTACACGTTTAAACCAACTTACAACTACCTCGAGTTCATCCTTCTGTTTCAAATCTGTATAAATCATTAGATCCATCCAAGGAAAAGAACTGTAGATCCTATGGCGGTTACCTTCTAGAAGAAAAGCCCTCGAGTTTCCGTAGCGAAAATGACTTTAGTTTTTATTGTGTACTTGTAGTGTTGAAGTAGATGGCACATTTTGTTTGTAGTCTGAAGTTTTTTCTGAATCATGATGTACATATATATATAAATGTGTGGGAACCAGGAAGAGTTAGTACAGGAGTGAGTGAGGTGTAGTAGTAGTACCAATAATAACTAAAATGTGTACTTGAATAATCTTTTAGAAATAAATTTTAAAAGAACTGATCTTACA 2110 42.61 MSEPKDPAIKLFGKTIPLPEASPATPQLPSSLPILTASDKNTAAVNHDHDSSSSSLSPEGNIDGDGEDLEVDKETVREKSGETKLEDGDGDGDGGLSGSTEEFTNSDTSAMRSDNSKVLSGEESNPSSTTKTDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHHRQIIVSEALQHARTDVSNGIHHSTLKPNGNGNVLAFGSDAPLCESMASILNIADKTRQNSTRNGFQKPEALKIPVAYENGENDDQSQESAATPSFIDNEEGKTGPQDQVIHNCQGFLPPQIPFFPGAPWPYPWNSPQWSSPVPPPTFYSPGIPMPFYPTAPFWGCTVPGAWTVPWVTQPPSLNPVAQNHAPNSPTLGKHSRDENVTKQSDFGGDEQQKDNKAERCLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDPVSEGLFQAFQSKKTDEKNRKAEASPVLQVNPAALSRSIKFHESS 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 80392837 80395476 + XM_039049431.1 Bhi11g02977 51689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g02977 514 MobiDBLite consensus disorder prediction 1 153 - -
Bhi11g02977 514 MobiDBLite consensus disorder prediction 137 151 - -
Bhi11g02977 514 Pfam Dof domain, zinc finger 150 207 IPR003851 GO:0003677|GO:0006355
Bhi11g02977 514 MobiDBLite consensus disorder prediction 412 434 - -
Bhi11g02977 514 MobiDBLite consensus disorder prediction 98 136 - -
Bhi11g02977 514 MobiDBLite consensus disorder prediction 70 91 - -
Bhi11g02977 514 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 513 - -
Bhi11g02977 514 MobiDBLite consensus disorder prediction 25 60 - -
Bhi11g02977 514 MobiDBLite consensus disorder prediction 394 411 - -
Bhi11g02977 514 MobiDBLite consensus disorder prediction 292 316 - -
Bhi11g02977 514 ProSitePatterns Zinc finger Dof-type signature. 155 191 IPR003851 GO:0003677|GO:0006355
Bhi11g02977 514 MobiDBLite consensus disorder prediction 394 434 - -
Bhi11g02977 514 ProSiteProfiles Zinc finger Dof-type profile. 153 207 IPR003851 GO:0003677|GO:0006355
Bhi11g02977 514 PANTHER CYCLIC DOF FACTOR 2 1 513 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g02977 - - - cmo:103486992 941.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00303 Bhi-Chr2:5756169 Bhi11g02977 Bhi-Chr11:80392837 1.43E-139 dispersed
Bhi02g00304 Bhi-Chr2:5756169 Bhi11g02977 Bhi-Chr11:80392837 1.43E-139 dispersed
Bhi07g01554 Bhi-Chr7:44599891 Bhi11g02977 Bhi-Chr11:80392837 6.81E-103 dispersed
Bhi08g02203 Bhi-Chr8:63004135 Bhi11g02977 Bhi-Chr11:80392837 7.72E-37 dispersed
Bhi11g02870 Bhi-Chr11:77071125 Bhi11g02977 Bhi-Chr11:80392837 5.11E-79 dispersed
Bhi11g02977 Bhi-Chr11:80392837 Bhi01g01514 Bhi-Chr1:30926443 3.84E-26 dispersed
Bhi11g02977 Bhi-Chr11:80392837 Bhi08g01160 Bhi-Chr8:36498204 4.81E-100 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g02203 CCT 12 175 C2C2-Dof Transcription Factor Family AT1G29160 59.7 6.0e-44 174.9
Bhi03g00282 CCT 6 160 C2C2-Dof Transcription Factor Family AT1G29160 51.4 3.4e-39 159.1
Bhi08g02203 CCT 12 175 C2C2-Dof Transcription Factor Family AT2G34140 54.1 1.6e-41 166.8
Bhi03g00282 CCT 6 160 C2C2-Dof Transcription Factor Family AT2G34140 50.3 3.6e-38 155.6
Bhi11g02243 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 67.4 4.0e-41 166.4
Bhi07g00911 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 63.8 6.4e-39 159.1
Bhi08g00621 . 1 139 C2C2-Dof Transcription Factor Family AT2G37590 57.0 6.0e-37 152.5
Bhi12g00102 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 80.8 4.0e-44 176.4
Bhi11g02977 . 133 514 C2C2-Dof Transcription Factor Family AT5G39660 50.6 1.6e-80 297.7
Bhi08g00621 . 1 139 C2C2-Dof Transcription Factor Family AT5G02460 57.8 3.1e-40 163.7
Bhi11g02243 . 53 135 C2C2-Dof Transcription Factor Family AT3G55370 80.7 8.7e-37 152.1
Bhi02g00056 . 48 347 C2C2-Dof Transcription Factor Family AT5G60850 53.4 9.1e-48 188.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008734 0 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2546 PF02701 zf-Dof 2.20E-32 No_clan Bhi TF