Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g03003 TTTCCTTCAAAATTTTCAAAATTTTATTATTATTATTATTTTTTTATTTTCTAAATTTAACATTATTATTATTATTATCAACAGTCATCACTGCTCATCATCATCTCCTTTTTTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTTCTTCTTCTTTTTCTGTGTCGCCTTTTTCTGGTTTCTGGTCTCCAATTCCCAATTTCAAACCCATCTGTTCCCTAATTTGTTTTTCCTCCCCCAATTTTCTCGAGAAACAAACACAATTTCACTTGGGGGTTTTCAAGTTATACGAAGTTTAATTTTGATTTTGAATTCTTTCGTTGTAAAGGGTTTGTAGTGCGACCCTTTTAAGAGGGTGTTTTCTCTGTTTTTTTTATTTTGTTTATTTTAATTCCATTTTTTTTTATATAAAAAATTTCTTCTTTTTAGCTTTTTGAGTTACCCTAAATGTTTGAGCTATGGACTTGACTCCTGCAATTTCCACCGCCGCCGCCACCATTTCTACCGGTGGAGGAGCTGTGAAATCCCCCGAATTAGACACTGAAACCCCCATCAAAATCCAACCCACCACCAAATCTCACCCCTTCACTAACGGCGTCCTCAAGCGCCACCACCACACGCCGCCGCCGCCTCCCCAGGTGGTCTACAAAGAATGCCTCAAGAATCAACCCGCCAGTTTGGGCGGCCATGCTCTAGACGGCTGCGGCGAGTTCATGTCANTCCCCACCGCCACCGCCACCGATCCCACCTCCCTCAAATGCGCCGCTTGCGGCTGCCACCGTAATTTCCACCGCCGTGAACCCGAGGACCCAATCGCTACTCCGACGACAACCCATGTCATTGAGTACCAACCCNNATCACGCCACCACCCGCCTCCGCCGCCTGCGGCGGCGGCATCCCACCGGAGCCCGAGTTCCGCCTCTCCTCCTCCGATCTCCTCCTCGTACTACCCTTCAGCTCCGCACATGCTTCTGGCCCTCTCTGGTGGGCTTCCGGATAACGCCGGCAGCGGCGGTGGATTCCACCACTCGATTCTGACTCCGAGCCACAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATCCAAGAATTCTGCAGCGATGTCGGAGTAGACAGAGGGGTTCTCAAAGTTTGGATGCACAACAACAAGAACACTCTCGGGAAAAAAGACGGCGGCCGGAACATCAACGGCAGCGGCGGCGTTGGGGACGGCGATGAGAAAATTAACGGCGGTGGTGAGCCACACGCCGCCGCAAATGGGTCATCTTCTTCCTCTTGATCTGAATAAATTGTTCGATGGATGTTAGAGAGAATATCAGAGATAGAAGAGTAAGCTTTTTTTTTTTTGCCCTCTTTCCTTTTTTTTTTTCTCCCCCAAGTTCATTTTCTAATTACATTTCAATATCTAAATTCCCACTCCAAAATATTTTCTCATTTTGTTTTTAATTAAATTAACGAGAAGATCACCTTGATAATATATGCTGAGAATTTAACATGAGGAATAATATATGTAGTTCATCATCATCATTATCATTAATTCATCTAATTACTTTAATTAGTTTATTAATCATTTTCCCCTTGTCGCCTAATCTCAAGGATTTTAATAATTAAACAAGGAAATCATCTGGAAATCCTGAATGGTATTAGTAAATAAGCAAATCTGTTCTTGATCTTCTCTTTTCCAAAATAAATAAATAAATAAATAATGTTATTAATTGTTATGAATCTGATTTAGAGAGAGGAGAGAGATATTTCTTCTTATCTTCTGTCTGAGAGAAAGCAGCAGAAAGTGTTTTGGTTCCTGTAAATTATTCTAGACTATCCCTAAGATTTGAACAGCACAGTATTTCTTTTTCTTTTCTTTTTTTTTT 1964 41.45 MDLTPAISTAAATISTGGGAVKSPELDTETPIKIQPTTKSHPFTNGVLKRHHHTPPPPPQVVYKECLKNQPASLGGHALDGCGEFMSXPTATATDPTSLKCAACGCHRNFHRREPEDPIATPTTTHVIEYQPXSRHHPPPPPAAAASHRSPSSASPPPISSSYYPSAPHMLLALSGGLPDNAGSGGGFHHSILTPSHNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGVGDGDEKINGGGEPHAAANGSSSSS 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 81564559 81566521 + XM_039050271.1 Bhi11g03003 51715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g03003 298 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Bhi11g03003 298 SUPERFAMILY Homeodomain-like 193 261 IPR009057 -
Bhi11g03003 298 MobiDBLite consensus disorder prediction 259 298 - -
Bhi11g03003 298 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 272 - -
Bhi11g03003 298 MobiDBLite consensus disorder prediction 174 202 - -
Bhi11g03003 298 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Bhi11g03003 298 Gene3D - 192 261 - -
Bhi11g03003 298 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Bhi11g03003 298 MobiDBLite consensus disorder prediction 16 60 - -
Bhi11g03003 298 MobiDBLite consensus disorder prediction 112 162 - -
Bhi11g03003 298 MobiDBLite consensus disorder prediction 30 44 - -
Bhi11g03003 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 272 - -
Bhi11g03003 298 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 200 257 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g03003 - - - csv:101204974 484.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01569 Bhi-Chr7:44900340 Bhi11g03003 Bhi-Chr11:81564559 4.27E-56 dispersed
Bhi11g00836 Bhi-Chr11:23129785 Bhi11g03003 Bhi-Chr11:81564559 1.27E-15 dispersed
Bhi08g01318 Bhi-Chr8:40054411 Bhi11g03003 Bhi-Chr11:81564559 4.41E-41 transposed
Bhi11g03003 Bhi-Chr11:81564559 Bhi06g00400 Bhi-Chr6:8781289 3.23E-98 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00810 . 53 246 ZF-HD Transcription Factor Family AT5G65410 51.5 2.3e-45 180.3
Bhi04g00810 . 22 242 ZF-HD Transcription Factor Family AT4G24660 52.7 2.7e-52 203.0
Bhi11g00836 . 57 194 ZF-HD Transcription Factor Family AT4G24660 52.7 1.1e-42 171.0
Bhi03g01303 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi03g01302 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi11g03003 . 12 298 ZF-HD Transcription Factor Family AT5G15210 50.5 2.5e-49 193.4
Bhi06g00400 . 1 252 ZF-HD Transcription Factor Family AT5G15210 51.2 3.3e-49 193.0
Bhi06g00400 . 17 254 ZF-HD Transcription Factor Family AT3G28920 59.3 3.4e-58 223.0
Bhi11g03003 . 22 283 ZF-HD Transcription Factor Family AT3G28920 60.7 9.9e-58 221.5
Bhi06g00400 . 25 258 ZF-HD Transcription Factor Family AT5G39760 55.4 7.4e-51 198.7
Bhi11g03003 . 30 273 ZF-HD Transcription Factor Family AT5G39760 55.7 2.9e-47 186.8
Bhi04g00810 . 22 242 ZF-HD Transcription Factor Family AT4G24660 52.7 2.7e-52 203.0
Bhi11g00836 . 57 194 ZF-HD Transcription Factor Family AT4G24660 52.7 1.1e-42 171.0
Bhi06g00400 . 25 258 ZF-HD Transcription Factor Family AT5G39760 55.4 7.4e-51 198.7
Bhi11g03003 . 30 273 ZF-HD Transcription Factor Family AT5G39760 55.7 2.9e-47 186.8
Bhi03g01303 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi03g01302 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi04g00810 . 53 246 ZF-HD Transcription Factor Family AT5G65410 51.5 2.3e-45 180.3
Bhi11g03003 . 12 298 ZF-HD Transcription Factor Family AT5G15210 50.5 2.5e-49 193.4
Bhi06g00400 . 1 252 ZF-HD Transcription Factor Family AT5G15210 51.2 3.3e-49 193.0
Bhi06g00400 . 17 254 ZF-HD Transcription Factor Family AT3G28920 59.3 3.4e-58 223.0
Bhi11g03003 . 22 283 ZF-HD Transcription Factor Family AT3G28920 60.7 9.9e-58 221.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2547 PF04770 ZF-HD_dimer 1.30E-26 No_clan Bhi TF