Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g03023 TTAACAGCTTAGAAAAATAAAAGAAGAATAAAGAAACTGAGGCTTGGTTAACATTAATTTTGGTCTGGCAAGGTCTTGAATAAACTTAGGTCGTTTACCTATTTGGGGTTCTTTCTTAGACCTTGACCAGCCCAAAAAGCTTGCTTTCAGAAAGAACCTCCAAAAAAAATTAAAAAAGGGTCCATTTTTGCTTGGGTCTTCATCAAGAAGAAGAAGAAGAAGATGGCAGGTTGTTGTAGTATTAAGGTTGTGATGTTTTTGGTTTCAATGGCTGTTCTTATGCCAACTCTAAGAGCTGGCATTGCTGAATATGATGATTATTTGCTCCAAAAGGCTGAAGAAGCCAAACAAGCTGCTCTTGAATCTTTCCATCCTGATCCCATGAATGTCACTGATCATTTCAACGAACATGTTCATTTGGCTTTGGAGGGAATAGAGGGAAGCAATAGCACTAGGAGGAGTCTGAAGAAATATAACGGTCCTTGCATGGCAACAAACCCGATTGACCGATGCTGGCGTTGTGACCGAAATTGGGCCATGAACCGTAAGAAGCTTGTCTCTTGCGTGCTTGGTTTCGGCCGAAAAACCACCGGTGGCTTGAGAGGACGTTTCTATGTTGTGACCGATCCATCGGATAACGACGTTATAAACCCTAGACGTGGAACCCTCCGACACGCCGCTATTCAAAAGCGGCCACTATGGATCATTTTTGGACGCAGCATGATCATCAGGTTGTCCAAGGAGCTGTTGATCACCAGCCACAAGACCATTGATGCTCGCGGTGCCAATGTTCACATTGCCTATGGTGCTGGTCTTAGCATTCAATTTTCCCGGAATGTGATCATCCACGGCCTTCACATCCACCACGTCGTTTCAGCTCGCGGTGGCATGATCAGAGACTCCGCTGACCATGTCGGCCTTCGAACCGTTAGTGACGGAGACGGTATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCATCTCTCTATGTCTAATTGCCAAGATGGACTCATCGACGCAATCCAAGGCTCCACCGCAATCACCATCTCAAACTCTCATTTCACTCATCACAACGACGTGATGTTGTTCGGTGCAAGTGATTCTTATCAAGGCGACTCAATCATGCAAGTGACCGTCGCGTTCAACCATTTCGGAAAGGGATTGGTGCAGAGAATGCCAAGATGCAGATGGGGTTTCTTCCATGTCGTCAACAACGATTACACTCATTGGCTCATGTACGCCATTGGCGGCAGTCAACATCCCACCATTATCAGTCAAGGAAACCGTTTCATCGCCCCACCAAACCCTGCTGCAAGACAGGTTACAAACAGAAACTATGCAACGGAGAGTGTATGGAGAACATGGACATGGAGATCGGAAGGGGATTTGATGATGAATGGAGCATACTTCATTCAGTCTGGGAATCCAAGCAAACGAAGGCCATACAGCAGGTTCGATATGATCAAGGCTAAGCCTGGCACCTTTGTTAGAAGGCTTACTCGCTTCTCTGGCTCACTCAACTGTTATGTTGGTCGCCCATGCTAAATCCAACAACCAACCAAATTTAATTTTTATTTCAAGCTTTAATTTACATTCGATGTTCTGCAACAAAAAAAAACATGGCGAAGAATAAGAGAAAGATAGAAGATGATAGAGGATGAAGTATTATGAGAGCAGCAGCAAAAATGGAATCTTTGACAAAAAAGATTAAATAAAAACCAAAGATCAGCAAAAGGGAAAGAACACAGAGATTGATGATCGACAACTTGAAGAAGGCTTGAAGAAGGAAGTTCATTTGTTTTTAATTATTATTTTGTATTGGAG 1827 43.68 MAGCCSIKVVMFLVSMAVLMPTLRAGIAEYDDYLLQKAEEAKQAALESFHPDPMNVTDHFNEHVHLALEGIEGSNSTRRSLKKYNGPCMATNPIDRCWRCDRNWAMNRKKLVSCVLGFGRKTTGGLRGRFYVVTDPSDNDVINPRRGTLRHAAIQKRPLWIIFGRSMIIRLSKELLITSHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHVVSARGGMIRDSADHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQVTNRNYATESVWRTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGSLNCYVGRPC 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 82254620 82256722 - XM_039049883.1 Bhi11g03023 51735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g03023 441 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Bhi11g03023 441 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Bhi11g03023 441 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Bhi11g03023 441 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Bhi11g03023 441 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Bhi11g03023 441 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Bhi11g03023 441 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Bhi11g03023 441 PRINTS Pollen allergen Amb family signature 412 435 IPR018082 -
Bhi11g03023 441 SUPERFAMILY Pectin lyase-like 92 431 IPR011050 -
Bhi11g03023 441 Gene3D - 91 434 IPR012334 -
Bhi11g03023 441 PANTHER PECTATE LYASE 7 441 - -
Bhi11g03023 441 Pfam Pectate lyase, N terminus 27 81 IPR007524 GO:0030570
Bhi11g03023 441 Pfam Pectate lyase 179 357 IPR002022 -
Bhi11g03023 441 PANTHER PECTATE LYASE 18-RELATED 7 441 IPR045032 GO:0030570
Bhi11g03023 441 SMART amb_all 166 363 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01228 Bhi-Chr4:30098174 Bhi11g03023 Bhi-Chr11:82254620 0 dispersed
Bhi08g01413 Bhi-Chr8:41879424 Bhi11g03023 Bhi-Chr11:82254620 0 dispersed
Bhi08g01414 Bhi-Chr8:41879427 Bhi11g03023 Bhi-Chr11:82254620 0 dispersed
Bhi11g03023 Bhi-Chr11:82254620 Bhi12g01517 Bhi-Chr12:49105909 2.72E-162 dispersed
Bhi11g03023 Bhi-Chr11:82254620 Bhi07g01600 Bhi-Chr7:45519784 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g03023 K01728 - csv:101202789 828.165