Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00032 TACTAATAAGATCATGGCACTTTGATTTGGATACGGAGAGAGAGAGGAATGTGGTTTCTTAGCAAGAAAGGACCATCTGGGTTCTCAGCTTCTTCCACAGCTGAAGAAGTTACAGAAGGAATCGATGGGACGGGTCTAACAGCCATTGTTACAGGTGCATCAAGTGGCATTGGCACTGAAACTGCTCGTGTTCTTGCGTTGCGTGGAGTACATGTAGTAATGGCGGTTAGGAATCTAGCAACTGGTAGGGAGGTCCAAGAAGCCATTGTCAAGGAAAACCCATCTGCCAAAGTTGATACCATGGAGTTGGATCTGAGTTCAATGGCATCTGTTCAGAATTTTGCATCAAATTTCAAGTCCTCAGGTCTTCCACTGAGCATTCTCGTTAATAATGCAGGAGTCATGGCTTCCCCCTTCTTGCTCTCGAAGGACAAGATAGAATTGCAGTTTGCAACAAACCATGTGGGACATTTTCTTTTGACAAATCTATTGTTAGAGACATTGAAAAAGACAGCAAAAGAAAGTGACAAAGAAGGAAGGATTGTCAATGTCTCGTCACGACGGCACCAATTTTCGTATCGTGAAGGCATCCAATTTGAAAAAATCAATGATCAATCAAGGTATAATGGCCTTTCTGCATATGGTCAATCAAAGCTTGCTAATATTTTGCATGCTTCCGAACTTGCAAGACAGCTGAAGGAAGAAGGGGTGAAGATAACTGCAAATTCACTACATCCTGGAGCCATTCCAACAAACCTATTTCGTTATCACAGCCTCATTAACCGTTTTCTTGGCGTACTGGGTAAACATGTGATGAAGAATGTACAACAGGGAGCAGCAACGACATGTTATGTTGCATTGCATCCACAAATCAAAGGGATTAGTGGCCATTATTTTGCTGACAGTAACATAGCCAAAGCAAGCTCACAAGCCCATGATAGTGAATTGGCAAAGAAACTGTGGGACTTCACCCAAAAGTTGATGATATCAAATTCCTTAAAAGCTTAAATAATTTACTCCTCATTCATATGTGAATTTGAATCAAGTTATAAATCAATCTTCTCCTACTATTAAGATTTTCATATTATAA 1090 40.55 MWFLSKKGPSGFSASSTAEEVTEGIDGTGLTAIVTGASSGIGTETARVLALRGVHVVMAVRNLATGREVQEAIVKENPSAKVDTMELDLSSMASVQNFASNFKSSGLPLSILVNNAGVMASPFLLSKDKIELQFATNHVGHFLLTNLLLETLKKTAKESDKEGRIVNVSSRRHQFSYREGIQFEKINDQSRYNGLSAYGQSKLANILHASELARQLKEEGVKITANSLHPGAIPTNLFRYHSLINRFLGVLGKHVMKNVQQGAATTCYVALHPQIKGISGHYFADSNIAKASSQAHDSELAKKLWDFTQKLMISNSLKA 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 606885 611303 + XM_039019249.1 Bhi12g00032 51844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00032 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 288 IPR036291 -
Bhi12g00032 319 Pfam short chain dehydrogenase 31 173 IPR002347 -
Bhi12g00032 319 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 312 - -
Bhi12g00032 319 PANTHER RETINOL DEHYDROGENASE 2 312 - -
Bhi12g00032 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Bhi12g00032 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Bhi12g00032 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Bhi12g00032 319 Gene3D - 23 315 - -
Bhi12g00032 319 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Bhi12g00032 319 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Bhi12g00032 319 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Bhi12g00032 319 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Bhi12g00032 319 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Bhi12g00032 319 CDD retinol-DH_like_SDR_c_like 29 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00032 - - - csv:101213775 556.984
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g00030 Bhi-Chr12:600352 Bhi12g00032 Bhi-Chr12:606885 4.30E-160 dispersed
Bhi12g00032 Bhi-Chr12:606885 Bhi12g00141 Bhi-Chr12:4152273 5.34E-68 dispersed
Bhi12g00031 Bhi-Chr12:600356 Bhi12g00032 Bhi-Chr12:606885 1.54E-164 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g720 . Blo15g00173 . . . . . . . . Cma02g01074 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00121 . . . . . . . . . . . Cmo02g01090 Cmo15g01147 . . . . . Cpe13g00263 Bhi12g00032 . . . . . Lcy12g0040 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00032 Bhi_Chr12 FPKM 0.0 0.0 0.0 0.0 1.55095 1.836568 1.489596 0.0 0.0 0.0