Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00033 AAATATCAGAACTTTGTAACTACTTCCAATTCAAAACTCTCTCGCTCTCGAATTTCATCACTGTGCTCTGACTTTCGTTTCGATCTTTTTTTAGTTGTTGTTTGATTGATTTGATATACAATTTCACGAATTTCTTTTATTCAAGTATTTGCAGAGGTTTCTTTGTGCTGCAGCACCGCGACGATCTGTTCGTTCATCTTTTTTTCTTTTTTTTTCCGTTCTTTTTTAGTATTATTGTTTTTTTTTTGGGAAATTAACGTTATGGATGCAGGATCTTTGAGTTCTTCTTCTAAAGCTAATCACTCTCGCTTTCCCCTTCAAGAACAGCAACTCCAGAAAAAGCATTCAAAAGAAAATTTGGATAGGTTTATTCCGAATCGATCGGCGATGGATTTCGATTATGCGCATTACATGGTTACTGATGGGAGGAAAGGTAAGGAAAATCCTTCTGTTAGTTCGCCGTCTAAGGAAGCTTATCAGAAGCGGTTGGCTGAGACACTGAACATGAATCGAACTCGAATCCTTGCGTTCAAGAACAAACCTCCTGCACCAGTTGAGATGATACCTAAGGAGTTCTTCTCCTCTGTTTCTCATGATAAACCCGTCAAGGCCCGCCGTCATATCCCTCAGACCTCTGAAAAGACATTGGATGCTCCTGACCTTGTTGATGATTACTACTTAAACTTATTGGATTGGGGCAGCACCAACGTGCTTGCTATAGCTCTTGGGAACACTGTGTATTTGTGGAACGCACAAGATGGTTCTACTTCAGAACTTGTAACGGTTGATGATGAAGTTGGTCCTGTAACAAGTGTGAATTGGGCTCCTGATGGAAGACACATTGCCGTTGGGTTGAACAATTCTGAAGTACAGCTTTGGGATTCGCTCTCGAATAGACAGCTAAGAACTTTGAGGGGTGGCCATAGGATGCGAGTGGGCTCACTGGCATGGAACAATCACATTCTCACAACTGGAGGAATGGATGGGAAGATCATTAACAATGATGTGAGAATTAGAGATCACATAGTGGAAACTTATAGAGGCCATGATCAAGAAGTCTGTGGGCTTAAATGGTCATTATCTGGACAACAATTAGCAAGTGGAGGGAATGACAATATCCTCCATATCTGGGACAGATCAACAGCATCTTCGAACTCAGCTACCCAATGGCTTCACAGGCTTGAGGATCATACTTCTGCAGTCAAGGCCCTTGCCTGGTGTCCATTCCAAGGCAACTTGCTAGCATCCGGTGGAGGCAGTGGAGATCGTTCCATTAAGTTTTGGAACACCCACACCGGAGCATGTTTGAATTCTGTTGATACTGGTTCTCAAGTATGTGCTCTACTATGGAATAAAAATGAGAGAGAGCTTCTCAGCTCCCATGGGTTCGCCCAGAACCAGCTCACTCTTTGGAAGTATCCTTCAATGGTGAAGATGGGAGAGCTCACGGGTCATACATCAAGAGTTCTCTTCATGGCTCAGAGTCCAGATGGATGCACTGTGGCTTCAGCAGCAGCAGATGAAACATTGAGATTATGGCATGTTTTTGGGGCTCCTGAAGTAGCTAAACCTGCTCCAAAATCCTATAACACAGAGCCCTTTGCTCATATCAATCGTATTAGGTAAATTGAATAATATACTTTTACTTAAGATAAATCATATACAAGTAGGAAGACCTGAAATTAGGTTGATAAAGAAGAATTAACGTTACACATCTTTGTTGTATTTGATATATTCACGAGAATTTTTTTTTTCTTTTTTTCTTTTTTTTTTGGACAGACATAAAAGAATGTCTTTGTATGTACTTTACAAATAAAGTTTACCGAGAAATATATGTGATGATTAATTTAATTTATGTTGTGTACTTGAA 1870 40.37 MDAGSLSSSSKANHSRFPLQEQQLQKKHSKENLDRFIPNRSAMDFDYAHYMVTDGRKGKENPSVSSPSKEAYQKRLAETLNMNRTRILAFKNKPPAPVEMIPKEFFSSVSHDKPVKARRHIPQTSEKTLDAPDLVDDYYLNLLDWGSTNVLAIALGNTVYLWNAQDGSTSELVTVDDEVGPVTSVNWAPDGRHIAVGLNNSEVQLWDSLSNRQLRTLRGGHRMRVGSLAWNNHILTTGGMDGKIINNDVRIRDHIVETYRGHDQEVCGLKWSLSGQQLASGGNDNILHIWDRSTASSNSATQWLHRLEDHTSAVKALAWCPFQGNLLASGGGSGDRSIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFAQNQLTLWKYPSMVKMGELTGHTSRVLFMAQSPDGCTVASAAADETLRLWHVFGAPEVAKPAPKSYNTEPFAHINRIR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 615049 617588 - XM_039019248.1 Bhi12g00033 51845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00033 454 CDD WD40 157 426 - -
Bhi12g00033 454 Pfam Anaphase-promoting complex subunit 4 WD40 domain 174 232 IPR024977 -
Bhi12g00033 454 MobiDBLite consensus disorder prediction 1 20 - -
Bhi12g00033 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 428 - -
Bhi12g00033 454 SMART WD40_4 345 385 IPR001680 GO:0005515
Bhi12g00033 454 SMART WD40_4 210 248 IPR001680 GO:0005515
Bhi12g00033 454 SMART WD40_4 168 207 IPR001680 GO:0005515
Bhi12g00033 454 SMART WD40_4 252 291 IPR001680 GO:0005515
Bhi12g00033 454 SMART WD40_4 300 342 IPR001680 GO:0005515
Bhi12g00033 454 SMART WD40_4 388 427 IPR001680 GO:0005515
Bhi12g00033 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 428 IPR001680 GO:0005515
Bhi12g00033 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 216 IPR001680 GO:0005515
Bhi12g00033 454 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 1 452 IPR033010 GO:0010997|GO:0097027|GO:1904668
Bhi12g00033 454 Pfam WD domain, G-beta repeat 304 342 IPR001680 GO:0005515
Bhi12g00033 454 Pfam WD domain, G-beta repeat 392 426 IPR001680 GO:0005515
Bhi12g00033 454 Pfam WD domain, G-beta repeat 257 291 IPR001680 GO:0005515
Bhi12g00033 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 175 207 - -
Bhi12g00033 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 300 IPR001680 GO:0005515
Bhi12g00033 454 Gene3D - 83 430 IPR015943 GO:0005515
Bhi12g00033 454 PANTHER CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE 1 452 - -
Bhi12g00033 454 SUPERFAMILY WD40 repeat-like 139 427 IPR036322 GO:0005515
Bhi12g00033 454 MobiDBLite consensus disorder prediction 1 34 - -
Bhi12g00033 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00033 K03363 CDC20; cell division cycle 20, cofactor of APC complex - csv:101213539 904.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g00033 Bhi-Chr12:615049 Bhi12g00333 Bhi-Chr12:9747208 2.08E-112 dispersed
Bhi12g00033 Bhi-Chr12:615049 Bhi12g00034 Bhi-Chr12:647982 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00122 Chy09g00982 . . . . . . . . . . . . . . . . . . Bhi12g00033 . . . . . . . . . . . . . . . . Cme09g01509
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001497 1 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 2 1 2 1 2 3 4 2 2 5 3 6 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00033 Bhi_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.13043 0.0 0.0 0.0