Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00049 CTTTCTCTTTTCTCTCTCCTCTCAATTTTTGTTTCCCTCTCTCAAAATTTTCACCAAAAAAAAAAAAAACAAAAAACAAAAAACAAAAACAAAAAACACTGTTAGTGCTCTGCAGTGCTGTTGCGATGAAGATGATTATGCCATCTTCTTCTTCTCCTTCTTTACTGTTGTTCAAAAATTTCTCTCTCTGGGTATTTTTTCTTTAAATTATTTCCAATTTTTTTCATAAAAAAAAAAATCGAATTCTGAAAATCCCTTATAGCACTAACTCGTAGGAATTCACTTTCTGACTTCCATTTTTTTTTTCCAGCTGTCTTCTCTTTCTCTCTCTCTCTCTCTCTCTGTTGCTTTTTAATTATGGCTTCTTTTTAAGTTTTTTCCATTCCCTTAAATTCCATCCTCCCCATTTCTTCATTCTTCTCCCTTTCATGGAGTTTCATCTCTACTGCTACTCAACTCTACCGTCGCAGGCTACCCATTGAATTTCCATAATTCCGCCGTTCAAACAAAGTGGAGACATGGAAGGAGCTGCAGCTGGATCCGGATCAGGATTAGGATTACCTGATCGATCTCAATTATTTGGAGTTTCCTCACCGCCGCCGCTAACCATCGATGCCACCATAGGTGATTCTCAGCAAGTCGAAGCTGCTTCTCCGATTAGTAGCCGACCTCCTGCTGTACCCTCTTCGTTAAATTACGAGGAACTCATTCGTCTCGGCGGCGGCGGCGGCGGTCAGATGGTGGTTGACGATGAAGAAGCTGACCGTAGCGGCGGCGGAAGCGGTGGTAATCGATGGCCGCGGCAAGAAACGCTTGCTTTGCTTAAGATTAGGTCAGAGATGGATTCAGCGTTTCGAGATGCTACACTTAAAGGACCTCTTTGGGATGAAGTCTCCAGGAAGCTAGGGGAAATGGGTTACAAGAGAAATGCGAAAAAATGCAAAGAGAAATTTGAGAATGTTCAAAAATATTACAAACGCACAAAAGAAGGAAGAGGAGGGCGTCAAGATGGCAAAACTTACAAATTCTTTACGCAACTTGAGGCTCTTCATAACGCAAACGTGGCGCCTTCTTCTTCTTCATTCACACTGCCACAACAACACCCCACCACTACCGTTGGCTTTGGGATTAGCAACCCAACTCCAATCTCATCCGTCAAAATTTCCACATCTTCTTCACAAACCCCAATGGGAATCTTTTCTCCTCCACCAGAACAATTCACTGTCCGGCCACCACCCACCGTCGCCGCTACGGGTGTTAGCTTTTCGTCGAACACCTCGTCTGCATCCACTGAAGACGATGATAACGATGAAGATGAAGTGATGGGGTTTGATGTTGACCTTGAAGGGTTGCCGGAGAACGTAGCGGGAAGTAGTCGGAAGCGGCGTAGAGGGGTGGTTAAAGGGAATGATCAGTCAAGAACTCATAAGATGATGATGGAGTTTTTTGAGGGTTTGATGAAACAAGTGATGGAGAAACAGGAAGTTATGCAACAGAAGTTTTTGGAAGCGATTGAGAAAAGGGAACGAGATAGGATGGTTAGGGAAGAGAATTGGAAAAGGGAAGAGATGGTGAGATTGAGTCAAGAACAAGAAAGAATGGCTCAAGAGCGGACAATTTCTGCTTCTAGAGATGCTGCCATCATTGCTTTTCTTCAGAAATTTACTGGCCAAACCATTCAATTTTCAGCCCCACAACAACAATTTGATGTGCCTGTGCCTGTGGCTGTACCTGTAACTGTGCCTGTGTCTGTACCTATGCCTATGCCTGTGCCAGCACCACTATCTCCTGTCCCTTCTCAGCCATTATTACAACCACAAACTCTGCCACACCTTCAGAATCAGCCGCCTTCAAATACAGTAATCCCATTGGATCAACCAATGTTTCAGGAAATTAGCCAAGGGGGAGATGGATCTTCAGAACCCATTTCTTCAAGATGGCCAAAACAAGAAGTTTTAGCATTAATAAAGCTGAGAGGTGGGCTTGAATCGAGGTATCAAGAAACAGGTCCAAAGGGTCCTCTGTGGGAAGAGATTTCAGCTGGAATGTTACGGATGGGTTACAAGAGAAGTGCTAAAAGATGTAAAGAGAAATGGGAGAATATCAATAAGTACTTCAAGAAAGTTAAAGAAAGCAACAAAAAACGCCGTGAGGATTCTAAAACTTGCCCTTATTTCAATGAACTTGATGCTCTTTATCGCAAGAAAATCCTTTCTACTGCTGCTTCTGATTCTGGTTCCTTTAGTGATACCAACAAATTTGAACAAAACCCAACAACAGATCTTCGTCCTCAAGGTCCTCAACCCCATTCTTCGATTCCACAAGGTTTGTCCGCTACTCTTTTTGGTGAAGGAACTGAAGATCAACAACCAACATCCACGAAGCCAGAAGACATTGTGAATGAGTTGATGGAGCTGCAGGACGACATTTATCGACGTCATCTCGATCGAGACAACAATGACGAAAACGACGATTATTCCAGTGATGATGACGACGACGACGATTTACCAGAAGAAAAGAGAAACGGTAACATTGATTATAAAATAGAGTTTCAAAGAAGAAACAATGTAGGAAACTCCAATGGTGTTGCGAGTGAGTTTCAATCGATGGCGGTGGTTCAATAATATTGCTTGATTCATATAAACACAATACACCCACATCTCAATCTTCTGTTTCATTTACACCCAAAAAATTCCTAACCCTTTTGCATTACAGTCCCCCAAGTTACCGTTCCTTCTATTTTTTTACCCCCCAAGAAAAAAAATTTCATTGCCCAGATACTTCTTATACTTTCTCTTCCCTTTCTTTGTGTCTAGAGCTGCCAGCATAAGATGATCATATGCATTTTTTTTTCAAAATTTCTCAATGACTATTTAGTTTTTTTTTTTTTTTTTTTTAATTTTTTATTTATCATATTCTTCTCAATTCATGTATTAATTATTTGTGAGGGGAAAATAAACAAAGTCTTTCTTTGGACTCATGAAGGAAACTTTGTAGAGCTTTATTATGAAGAAATGTGAGAGATAGATGATGGGGGGGAAGGGGAAATTCTTTCATGTCATAGTCATCTTCAAGATTTGTATTATTTCATTCTTTTGGCTGAATAACTTGTGATAGTGTTATATGTTATTGTAAGTTATGTATATCATATCTTTATGATAATATAATGAGCCTTCTGATGAGTTAAGAGGAA 3193 40.65 MEGAAAGSGSGLGLPDRSQLFGVSSPPPLTIDATIGDSQQVEAASPISSRPPAVPSSLNYEELIRLGGGGGGQMVVDDEEADRSGGGSGGNRWPRQETLALLKIRSEMDSAFRDATLKGPLWDEVSRKLGEMGYKRNAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTQLEALHNANVAPSSSSFTLPQQHPTTTVGFGISNPTPISSVKISTSSSQTPMGIFSPPPEQFTVRPPPTVAATGVSFSSNTSSASTEDDDNDEDEVMGFDVDLEGLPENVAGSSRKRRRGVVKGNDQSRTHKMMMEFFEGLMKQVMEKQEVMQQKFLEAIEKRERDRMVREENWKREEMVRLSQEQERMAQERTISASRDAAIIAFLQKFTGQTIQFSAPQQQFDVPVPVAVPVTVPVSVPMPMPVPAPLSPVPSQPLLQPQTLPHLQNQPPSNTVIPLDQPMFQEISQGGDGSSEPISSRWPKQEVLALIKLRGGLESRYQETGPKGPLWEEISAGMLRMGYKRSAKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFNELDALYRKKILSTAASDSGSFSDTNKFEQNPTTDLRPQGPQPHSSIPQGLSATLFGEGTEDQQPTSTKPEDIVNELMELQDDIYRRHLDRDNNDENDDYSSDDDDDDDLPEEKRNGNIDYKIEFQRRNNVGNSNGVASEFQSMAVVQ 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1024768 1028174 + XM_039018611.1 Bhi12g00049 51861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00049 701 MobiDBLite consensus disorder prediction 570 625 - -
Bhi12g00049 701 MobiDBLite consensus disorder prediction 649 664 - -
Bhi12g00049 701 MobiDBLite consensus disorder prediction 425 450 - -
Bhi12g00049 701 Gene3D - 93 154 - -
Bhi12g00049 701 Gene3D - 474 535 - -
Bhi12g00049 701 PANTHER - 72 662 - -
Bhi12g00049 701 MobiDBLite consensus disorder prediction 639 701 - -
Bhi12g00049 701 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 72 662 - -
Bhi12g00049 701 MobiDBLite consensus disorder prediction 432 450 - -
Bhi12g00049 701 MobiDBLite consensus disorder prediction 570 624 - -
Bhi12g00049 701 MobiDBLite consensus disorder prediction 680 701 - -
Bhi12g00049 701 MobiDBLite consensus disorder prediction 1 56 - -
Bhi12g00049 701 CDD GT1 472 537 - -
Bhi12g00049 701 ProSiteProfiles Myb-like domain profile. 91 149 IPR001005 -
Bhi12g00049 701 MobiDBLite consensus disorder prediction 31 55 - -
Bhi12g00049 701 MobiDBLite consensus disorder prediction 69 94 - -
Bhi12g00049 701 SMART sant 89 151 IPR001005 -
Bhi12g00049 701 SMART sant 470 532 IPR001005 -
Bhi12g00049 701 MobiDBLite consensus disorder prediction 244 265 - -
Bhi12g00049 701 CDD GT1 91 156 - -
Bhi12g00049 701 Pfam Myb/SANT-like DNA-binding domain 472 559 IPR044822 -
Bhi12g00049 701 Pfam Myb/SANT-like DNA-binding domain 91 177 IPR044822 -
Bhi12g00049 701 ProSiteProfiles Myb-like domain profile. 466 530 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00049 - - - csv:101212243 993.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00533 Bhi-Chr2:10132959 Bhi12g00049 Bhi-Chr12:1024768 2.24E-10 dispersed
Bhi02g01212 Bhi-Chr2:28472211 Bhi12g00049 Bhi-Chr12:1024768 2.83E-07 dispersed
Bhi12g00046 Bhi-Chr12:1024764 Bhi12g00049 Bhi-Chr12:1024768 3.05E-24 dispersed
Bhi12g00047 Bhi-Chr12:1024765 Bhi12g00049 Bhi-Chr12:1024768 2.67E-24 dispersed
Bhi12g00048 Bhi-Chr12:1024766 Bhi12g00049 Bhi-Chr12:1024768 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g296 . . . . . . . . . . Cma02g00969 Cma15g01346 Car02g00715 Car15g01214 . . Cpe05g00748 . . . . . . . . . . . . . . Cone8ag0572 Cone12ag0575 . . . Csa05g00132 Chy09g01362 . . . . . . . . . . Cmo02g00975 Cmo15g01408 Cma06g00453 . . . . . Bhi12g00049 . . Lac11g1813 . . . Cla01g00116 Cam01g0118 Cec01g0118 Cco01g0119 Clacu01g0115 Cmu01g0116 Cre09g2389 Lsi09g00104 . . Cme09g01908
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006703 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2562 PF13837 Myb_DNA-bind_4 2.00E-22 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00049 Bhi_Chr12 FPKM 9.212882 8.812721 19.8659 17.569645 63.157852 64.95575 59.073143 39.936424 39.859318 36.095486