Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00102 TGTTTGAAAGTGAGCAAATAAAGGAAGGGTTTTTGAACAATTGATAAGGGAGAAGTTCTCACATGAACCATCTGGAAAAAAAATAAAATAAAACATTCTTTTTTAGATCATCTCTCACCACTTTCAAGGTTTCAACTTTACTCTCTTTTTTTTTTTCCTCTCTAACAAAAACATAAAACAAATAACAAAACCCTTCAAAATTTTCCCACTTTAATTAATTTTTTCTTCACTTCCCATGGATACTGCTCAATGGCCACAGGAGATTGTGGTGAAACCAATTGAAGAAATTGTGACAAACACATGCCCAAAACCAAGTGTTTCAATTTTAGAGAGGAAAATTAGACCTCAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAACCAATACCAAGTTTTGTTATTACAATAATTATAGCCTTACACAACCAAGATACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGATCCTTAAGAAATATTCCTGTTGGTGGAGGCTCAAGGAAGAACAAGAGACCTTCTTCTTCTTCATCTACATCTACATCTCCCACACCTTCTTCATCTCATCAACCTATTCCCAAGAAAATTCTTGATCTCCCTCAAAACCCTAAACCCACCCAAGATCTCAACTTGTTCTTCCCACCCTCAAACCATCAAGATCATCATCATTTCACCACCAATAACCTCTCCGAAATCGTTGTCGTCGGTGGTAAACCTACAATTGCCAGTTCCTCATCGGCCTCTGCTGTGTCGTCGTCGCCACCGGCCCCATCGCATCAGCCTTCGGCAATGGAGCTTCTCACCGGAATGACGAGTAGCAACAACAACAACTCTAGGGGTTTGAATTGTTTCGTTTCAATGCCGCCTGTTGTCGTCCCCGATCCTGGCTCCGTTTACACGGTAGGGTTTCCTGATCTCCATGATCAGTTCAAGCCAAGCCTTGGATTCTCTCTCGATGGCTACGGCATCGTCCAGACGGAGGCGAGCAATGGCGGGGGGAGGCTCATGCAGCTGCCATTTGAGGATTTGAAGCAAGGGTCTAATGGAGTTGAACAAGGCAAAGAGCAAGGAGATCATAATTCAAATGGGTATTGGAGTGGAATGTTGGATGGAGGATCATGGTAAATTCTAGGGCTGAATCATATCATTATTCACATTTTGGATCTTTCAACCTCTTTTATTCTTGTCTCCAAAGTGGTTTTCTTCCTCAATTTCAGTCATTAAACTGATTTTTTTTCAACCCATCTTTTATCTCTATTTTTGGTTAAGATTCATTGACGAAATGATGAACTTGAAAAACATATAATCAGTTCAATGACTGAATTATTGATGAAAAAAACAATTTAGAAACAAGAACCAAATTCTATAGCTAGCTAGTACAACACTTAGAACCTTGTTTATTTTGAACCCTAGTTTATTAGATCAATATAACTTTTCAAATTTGACTAATTTTCTCCCTTTGTATTAGGTGACTTTGCTTTGAAATCCTTTTTACATTACTAATGGACATAGTTTATTAGATCAA 1535 38.37 MDTAQWPQEIVVKPIEEIVTNTCPKPSVSILERKIRPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSSSSTSTSPTPSSSHQPIPKKILDLPQNPKPTQDLNLFFPPSNHQDHHHFTTNNLSEIVVVGGKPTIASSSSASAVSSSPPAPSHQPSAMELLTGMTSSNNNNSRGLNCFVSMPPVVVPDPGSVYTVGFPDLHDQFKPSLGFSLDGYGIVQTEASNGGGRLMQLPFEDLKQGSNGVEQGKEQGDHNSNGYWSGMLDGGSW 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3311893 3313977 - XM_039020258.1 Bhi12g00102 51914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00102 299 MobiDBLite consensus disorder prediction 274 293 - -
Bhi12g00102 299 MobiDBLite consensus disorder prediction 94 116 - -
Bhi12g00102 299 MobiDBLite consensus disorder prediction 270 299 - -
Bhi12g00102 299 MobiDBLite consensus disorder prediction 128 145 - -
Bhi12g00102 299 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Bhi12g00102 299 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Bhi12g00102 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 296 IPR045174 GO:0003700|GO:0006355
Bhi12g00102 299 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Bhi12g00102 299 MobiDBLite consensus disorder prediction 84 145 - -
Bhi12g00102 299 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00102 - - - csv:101204617 483.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01514 Bhi-Chr1:30926443 Bhi12g00102 Bhi-Chr12:3311893 1.70E-38 dispersed
Bhi08g01605 Bhi-Chr8:46086408 Bhi12g00102 Bhi-Chr12:3311893 1.33E-36 dispersed
Bhi12g00102 Bhi-Chr12:3311893 Bhi12g00672 Bhi-Chr12:20013390 2.83E-51 dispersed
Bhi12g00102 Bhi-Chr12:3311893 Bhi10g00593 Bhi-Chr10:13006453 3.42E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g209 . . . . . . . . . . Cma02g00866 Cma15g01306 Car02g00682 Car15g01176 . . . . . . . . . . . . . . . . . . . . . . Csa05g00030 Chy09g01317 . . . Bda07g01944 . . . . . . Cmo02g00942 Cmo15g01373 . . . . . . Bhi12g00102 . . Lac11g1945 Hepe06g1450 . Lcy12g1540 Cla01g00159 Cam01g0165 Cec01g0162 Cco01g0166 Clacu01g0161 Cmu01g0160 Cre09g2346 Lsi09g00151 . . Cme09g01866
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g02203 CCT 12 175 C2C2-Dof Transcription Factor Family AT1G29160 59.7 6.0e-44 174.9
Bhi03g00282 CCT 6 160 C2C2-Dof Transcription Factor Family AT1G29160 51.4 3.4e-39 159.1
Bhi08g02203 CCT 12 175 C2C2-Dof Transcription Factor Family AT2G34140 54.1 1.6e-41 166.8
Bhi03g00282 CCT 6 160 C2C2-Dof Transcription Factor Family AT2G34140 50.3 3.6e-38 155.6
Bhi11g02243 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 67.4 4.0e-41 166.4
Bhi07g00911 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 63.8 6.4e-39 159.1
Bhi08g00621 . 1 139 C2C2-Dof Transcription Factor Family AT2G37590 57.0 6.0e-37 152.5
Bhi12g00102 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 80.8 4.0e-44 176.4
Bhi11g02977 . 133 514 C2C2-Dof Transcription Factor Family AT5G39660 50.6 1.6e-80 297.7
Bhi08g00621 . 1 139 C2C2-Dof Transcription Factor Family AT5G02460 57.8 3.1e-40 163.7
Bhi11g02243 . 53 135 C2C2-Dof Transcription Factor Family AT3G55370 80.7 8.7e-37 152.1
Bhi02g00056 . 48 347 C2C2-Dof Transcription Factor Family AT5G60850 53.4 9.1e-48 188.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2565 PF02701 zf-Dof 4.30E-33 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00102 Bhi_Chr12 FPKM 29.43976 30.488983 21.010164 19.449306 28.398172 29.450842 30.131905 6.504076 6.90414 6.844772