Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00150 CGAATTGAAACCATGGAGCCACCAAGATTAGCCGCGTGGCTCTGCAATTTATGAACTTTCGAAGACTTTTGTTTCGTTTTTCCGTGTGTGAATGAATCTCTCATACTTCCGCTTTTAATTCTGACTTTTTTTCATTAAATCCAAAAAGTAGCCTTTTGGCCTTCAATCAATGACCAGGTCCTCCATTTTTCTCCAATCCTCTGTTTCTTCCTCTTCATCACTTATAAATTCCCACTCTAATTCTACTCCTTCTTCATCCTCCAACAACCAAAACCAATTCCCCACAAAGACAAACAAGAAAACACCAATGATTCAATTTCTCATTTCTGGGTTCTAATCAAAATCCTCTGTTTCAGACACGTCGCCGGAAAACATGGACACCGTGATGAACAGACCGAATCTTCAGTTCGGGCTAACGGATGTTTCAACAGCTCTTTCGAATCTGATTCTAACAGGCGGAGGAAACACATTGGATTCGATCTTCTCTCACTGTGAGAATTTAGCCTCTGGTAACGACAGCAGAGATTTTCAGCCGGCGATGGAGTCGTCGGTGTATCCGTCGGTGTATCTTCAGCAGCGGGAGGTGCTTCAGAGATTTTCTCAGGACAGGAAATCAAATGGGTCTCGGGATTTGTTTTCAAGGGCTTACGAATTGTTGTATTCGCGAAGTGGCGCCGCCGTGGACGGCAGGGAGAAGAAGATTTACAGAGGTGTGCGGCAGAGACATTGGGGGAAATGGGTAGCAGAGATTCGGCTGCCGCAGAATCGGATGAGGGTATGGTTAGGGACCTACGATTCGCCGGAGACAGCCGCCTACGCGTACGACTGCGCCGCCTGTAAGCTCCGTGGGGAATATGCGCGGTTGAATTTTCCGAATCTTAGGGACTTGAAAACCGATTTGGGCTCCGGCGAGTTTGCGAGATTGAGTGAGTTGAAGAAATTGGTGGATGCGAAGATTCAAGCGATTTTTCAGAAGATTCGGAAGGGGAAAGCGAAGAAGAGTGTGAAGAAGAAGGATTCTCAGGGAACCGGCGGCGATTTGTGTTCGGGTTCATGTTCTTCTTCGTCGTCCTCGGTGTCTCTGCCGCCGGCAGCAGTGGAGTTGACGGATGAGTGGAGTTGGGAAAATGTGCAGCCGCCTGTCACGGCGGAAGAGGGGTTGTGGAACTTTGAGAACTCGGCTCGAGGTGGCTCTATGGATTGTGCGACGGCGATGACGGCGGCAGGATCAGAAACAGAGTGTTACTCGTTGGCAAAGATGCCTTCCTTTGACGCAGACCTAATTTGGGAAGTTCTTGCAAACTAGAGCTTGTTAATCCCCATTAGAGCGAAAAAAAAAAAGCAACTTTTTTTGTTAAATGACAAATTAAGATGTTGAAAGTTTTAATTTAGGAAACAAAATTTTGGATTTTAACTTTAACGGGCATTTTTTTAAA 1436 46.24 MDTVMNRPNLQFGLTDVSTALSNLILTGGGNTLDSIFSHCENLASGNDSRDFQPAMESSVYPSVYLQQREVLQRFSQDRKSNGSRDLFSRAYELLYSRSGAAVDGREKKIYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDSPETAAYAYDCAACKLRGEYARLNFPNLRDLKTDLGSGEFARLSELKKLVDAKIQAIFQKIRKGKAKKSVKKKDSQGTGGDLCSGSCSSSSSSVSLPPAAVELTDEWSWENVQPPVTAEEGLWNFENSARGGSMDCATAMTAAGSETECYSLAKMPSFDADLIWEVLAN 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4558608 4560043 + XM_039050789.1 Bhi12g00150 51962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00150 310 MobiDBLite consensus disorder prediction 209 235 - -
Bhi12g00150 310 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Bhi12g00150 310 PRINTS Ethylene responsive element binding protein signature 149 169 IPR001471 GO:0003700|GO:0006355
Bhi12g00150 310 CDD AP2 109 169 IPR001471 GO:0003700|GO:0006355
Bhi12g00150 310 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Bhi12g00150 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 11 310 - -
Bhi12g00150 310 MobiDBLite consensus disorder prediction 220 235 - -
Bhi12g00150 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 11 310 - -
Bhi12g00150 310 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Bhi12g00150 310 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Bhi12g00150 310 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
Bhi12g00150 310 Gene3D AP2/ERF domain 110 168 IPR036955 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00150 - - - csv:101209624 493.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02928 Bhi-Chr1:72616175 Bhi12g00150 Bhi-Chr12:4558608 1.69E-62 dispersed
Bhi12g00150 Bhi-Chr12:4558608 Bhi05g01853 Bhi-Chr5:58150471 1.06E-25 dispersed
Bhi12g00150 Bhi-Chr12:4558608 Bhi03g01206 Bhi-Chr3:25006490 4.98E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g126 Blo02g01147 . Bda06g00142 . Bpe05g00691 . . Bma14g00632 . Cmo16g00601 Cma02g00907 Cma15g01277 Car02g00657 Car15g01151 . . . . . . . . . . Cla07g01421 Cam07g1522 Cec07g1618 Cco07g1578 Clacu07g1510 Cmu07g1480 Cre07g1857 . . Cone6ag0849 Cone9ag0847 . Csa05g00207 Chy09g01291 . . . Bda07g00459 . . Bpe11g00636 Bma05g00873 . . Cmo02g00914 Cmo15g01346 . Cma16g00550 . . . . Bhi12g00150 . . . . . Lcy12g1572 Cla01g00191 Cam01g0196 Cec01g0190 Cco01g0196 Clacu01g0192 Cmu01g0188 Cre09g2319 Lsi09g00178 Csa04g00651 Chy07g01159 Cme09g01837
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011520 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 2 1 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2571 PF00847 AP2 1.10E-13 CL0081 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00150 Bhi_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0