Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00161 AAAAGATATTTTGTTTTTCTGCTTTCTATTCAGCTATTGTGTCACACGTATTTCTCTCTATTTTTCGTTTGCTGGTTTCTCCTTCTTCTCAGTGCTTTCTAGGGTTTTTCCTCTGCTTAATTTCTTCTTTATTTTCTCTTTTTTTTTTTTTTTTTTTTAATTTTTTCTCTGCTTCTCAGCTCGTCGGATACTTGTTGAAGTTGATTCTTAATTGAATATATATATATATACACAGAATATATATATATTATATTTGTTTTTTAAATTTTCTGGTGCGGAATTCATTACTGTTTGGCAGCTGGGAAAGTGAAGATGAGTTGTGGATGGAGGCGGCAGTTTATATATTGCTGTTTTTCTGTGTACTTTTTGACAGATGTAGGGAATTTGTGCTCGGAGCAGGTTAGAGGGCAATCAAGTATGTGAAAGAATGAAGTTGGTCTGGAGAGAATGGAAGAAATGAGCGAGGATATGACGCTATTGGATGCGACAGAGGATGCACATGTCCAAAATAAGGTCAGGCAAGATGCTCAGGAGAATGAGTATTTGCTGAAACCTGAAAATACCAACATAGTTGAATCACAAGAAATGGTTATACCCATTGACGGTGGCTATTCACAGGATTATCCTCATGAATTTACTGACATTTTAGAGGGTAAGAATCTTAATAGGTGTAAAAACAATGTGAAATTATCTGATCAACCAGAGTGCAGTCCTCATTGTATGGATGATGCTGGCGTAATGGTTGAAGAGCTAACTGTGAAAAATCACAATGGATCCAATTTAGCAATTATTGGTCCATCAAACAATAGAGCACGGCTGCTTTCTAGGCACAGTCAGTGGCAACATCTTTACCAGCTGGGAAGTGGTTCAGGAAGTGGGAGTTCACGTATCGATACTTCTTACAAGAACAATGGTCAGGCAGTAACCCCTGGCTTGGAGAATGCTGGGTACACATCTTTTCCCGAGGCTTTTGCTGGAAGAGCCAGTCGTAATGATTGTGGAGAAGAATTGGAAGAAATGAAGGCTACTGACAATAAGGGTGGTGATACTCATGGCAGTATTCGGACCAAGATTCTATCAAAATCGGGTTTTCCTGAATTTTTTGTTAAAAATACCTTGAAAGGCAAGGGGATCATTCGTAGAGGTGTACAACTGGAGCGCTTTAATGTTGAACATAGAAACCCTAAGAATGCAAGGATTGGTGGGGGTATTACATTGGCATCTGGCTCATCATTACAGCATGATGTTAATGATGTTAAGCCTGTCATTCCTGCTTTGTATAGGAAATCCGAGCACAAACATCGGGGTTCTTCTTTTGATGGCATTAGTATGAGAGAATGGCTTAAAGTTCCCAACCAAAAAGTAAATAAAATTAAATGCTTGTATATATTTAGGCATGTAGTTGAGCTGGTGGATCGTTTTCATGCTCAGGGGGTTTTGTTGCATGACTTACGTCCATCTTCTTTCAGGATATTGACGACAAATCAGGTAAGGTACTTTGGAGCTTTTATTCAAGGGAAATCTCCAGAAAGCCTAATGGTTAAAGACGGTCAGTGTTCAGATAACCATCTGACTCGGAAAAGGCCATTGGAGCAAGGGAACTTTCTGTCATTTGGTGGATCTCCAAAAAAACAAAAAGATGTCCAGAATATGAGTCTTATGGCCCGACACTCTCATTTTCCTTTAAAATCTGGTGCCAATCTTGAAACTGCAAATACTAGGGACTGCAATAAGAATGGTTTGGAAAATTATAATGAACATTTTGCGGAACAGGGGGGTTGGAACAAGCCTGCTGGCCTTCGTGTATATGATTCTGCCCCGACTTCAATAAGTGACTTATTGGAAGAGACGTGGTACGTAAGTCCAGAGGAACTTATTACAGGATGCTGCTCAGCTAAATCAAATATATTCTCTCTTGGTGTTCTTCTTTTTGAGTTACTTGGAAAGTTTGAATCGGATGGTGCACTTGCTGCAGCGATGTCAAATTTGCGCGAGAGGATTCTTCCTCCTAACTTTCTAGCCGATAATTTGAAGGAAGTTGGTTTTTGTCTTTGGCTTCTTCATCCTGAACCTGCATCTCGTCCGACAGCAAGCGAAATTTTAGAATCAGAACTAATTAATGGGATGGCAAATGTTCCGGCAGCAGAGATTTCAACATCTATTGATGAAGAAGATGCTGAATCGGAGTTATTATTGCAGTTTCTCACATCATTGAATGAGCAAAAGCAGAAACATGCCTCAAAGTTGGTGGAAGACATACGGTATTTAGAATCAGATATTGAAGAAGTCAATAAAAGGCACAGCTCAGCCAAACCCTTGGATAAATCTGGCTTGTCTACGGTGGATAGAAGGGATGATTTGATCCTTCATGGAGGATATTTAAATTCAGATATGCACTCTCAGGTATATAGAATATCACAAACCAATGAAGAGAGAATAGCAAAAAATATAAGTCAGCTTGAAAGTGCTTATTTTTCCATGAGATCAAAAGTAGATCCTTCTGAGAATGATACAGCAATTCGGACAGATAATGATTTACTGAGAACTCGTGAAAACTGCTATCTACCACAGAAAGATGATGAGAGGAGTCACAGTGATCGTCTAGGTGCCTTTTTTGATGGGTTTTGCAAGTATTCTCGTTATAGCAAGTTTGAAGTACGTGGGGTACTGAGAAATGGCGATTTTAACAGTTCCTCGAATGTAATCTGTTCCTTGAGTTTTGATCGGGATGAGGACTATTTTGCTGCTGCTGGAGTGTCAAAGAAAATAAGGATTTTTGAGTTTAACTCACTCTTTAGTGACTCGGCAGATATTCACTATCCCGCAGTTGAAATGTTTAATAGATCAAAGCTTAGTTGTGTTTGCTGGAATAGCTACATCAAGAACTATCTGGCTTCAACTGATTATGATGGCGTTGTTAAGTTATGGGATGCAACTGTAAGTCAAGAGGTTTCTCAATTCAATGAACACAATAAGAGGGCGTGGTCTGTCGACTTTTCACAAGTGCATCCTACAAAATTGGCCAGTGGAAGTGATGATTGTTCTGTGAAACTTTGGAGTATTAACGAGAAGAACTGTTTGGGCACAATTAGGAACATAGCAAACGTCTGCTGCGTTCAGTTCTCTGCTCACTCAACTCATTTGCTGGCTTTTGGGTCTGCCGATTACAGAACTTATTGCTTTGATCTACGTAATACTAGAGCCCCCTGGTGTGTGTTGGGTGGCCATGAAAAAGCTGTAAGCTATGTGAAGTTCTTGGACTCGGGGACTCTTGTTTCGGCATCCACAGACAACACGTTGAAGCTATGGGATCTTAATAGAACCAATCCTACTGGCTTGTCTTCCAATGCTTGCAGTTTAACACTCAGCGGCCACACTAATGAAAAGAATTTCGTGGGTCTATCAGTTTCCAATGGCTACATTGCTTGTGGTTCAGAAACAAACGAAGTATATGCTTACCATAGATCTCTGCCTATGCCAATGACTTCCTATAAGTTTGGTTCTATCGACCCTATTTCTGGAAAAGAGACCGAGGACTACAATGATCAGTTTGTTTCGAGTGTATGCTGGAGAGGAAAATCCGACATGGTTATTGCAGCCAACTCAAGTGGTTGCATAAAAGTACTACAAATGGTTTGAGAGTGAAAATCGAACCCCTGATTAACTTGACGAATGTGGTCAACTTCAATCACTTTACAGCTCGTGGATTTGACAAAATATCTGAAGCCCTATTCTGAGACTAAAGTATAAAAATGGTAACAGCATTTACATTTTCATCTCACATTTCCTCCTTTTCTTGAGTTATATAAGTTGAGTTATTGATTCAATATAATATGGAATCATATGATTGAAAAAGCTGCCGCAGAGTTTTTTAGTGAATGTGTATATATATAAAAGAAATATATGTCTCTAAATTCTACACTTCTAACCGATAATTTATTCGATTCTTTTCGTGATTGTAATTTTACCCAACAGCTAGTTATAAAAGCTGCATAAAGAAGCAGAATGGTTGCATATTGAGATTGAACACTTCCTCTTCTGGATTTTGAATTTTCTCCCTTGAGCTTTCATAGGATTTGTGTTTGAATTGTGGAGACCAATTTTAACTTTGGCTGCTCAAATATGTACTGAAAATCTAAGCATGGGGAACATTACAAACACTATATTTACACACATTTTAAATCCA 4186 38.82 MEEMSEDMTLLDATEDAHVQNKVRQDAQENEYLLKPENTNIVESQEMVIPIDGGYSQDYPHEFTDILEGKNLNRCKNNVKLSDQPECSPHCMDDAGVMVEELTVKNHNGSNLAIIGPSNNRARLLSRHSQWQHLYQLGSGSGSGSSRIDTSYKNNGQAVTPGLENAGYTSFPEAFAGRASRNDCGEELEEMKATDNKGGDTHGSIRTKILSKSGFPEFFVKNTLKGKGIIRRGVQLERFNVEHRNPKNARIGGGITLASGSSLQHDVNDVKPVIPALYRKSEHKHRGSSFDGISMREWLKVPNQKVNKIKCLYIFRHVVELVDRFHAQGVLLHDLRPSSFRILTTNQVRYFGAFIQGKSPESLMVKDGQCSDNHLTRKRPLEQGNFLSFGGSPKKQKDVQNMSLMARHSHFPLKSGANLETANTRDCNKNGLENYNEHFAEQGGWNKPAGLRVYDSAPTSISDLLEETWYVSPEELITGCCSAKSNIFSLGVLLFELLGKFESDGALAAAMSNLRERILPPNFLADNLKEVGFCLWLLHPEPASRPTASEILESELINGMANVPAAEISTSIDEEDAESELLLQFLTSLNEQKQKHASKLVEDIRYLESDIEEVNKRHSSAKPLDKSGLSTVDRRDDLILHGGYLNSDMHSQVYRISQTNEERIAKNISQLESAYFSMRSKVDPSENDTAIRTDNDLLRTRENCYLPQKDDERSHSDRLGAFFDGFCKYSRYSKFEVRGVLRNGDFNSSSNVICSLSFDRDEDYFAAAGVSKKIRIFEFNSLFSDSADIHYPAVEMFNRSKLSCVCWNSYIKNYLASTDYDGVVKLWDATVSQEVSQFNEHNKRAWSVDFSQVHPTKLASGSDDCSVKLWSINEKNCLGTIRNIANVCCVQFSAHSTHLLAFGSADYRTYCFDLRNTRAPWCVLGGHEKAVSYVKFLDSGTLVSASTDNTLKLWDLNRTNPTGLSSNACSLTLSGHTNEKNFVGLSVSNGYIACGSETNEVYAYHRSLPMPMTSYKFGSIDPISGKETEDYNDQFVSSVCWRGKSDMVIAANSSGCIKVLQMV 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4723688 4731317 + XM_039019856.1 Bhi12g00161 51973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00161 1063 Gene3D Transferase(Phosphotransferase) domain 1 293 566 - -
Bhi12g00161 1063 PANTHER PROTEIN SPA1-RELATED 2 4 1063 - -
Bhi12g00161 1063 ProSiteProfiles Trp-Asp (WD) repeats profile. 838 880 IPR001680 GO:0005515
Bhi12g00161 1063 SMART WD40_4 831 871 IPR001680 GO:0005515
Bhi12g00161 1063 SMART WD40_4 874 913 IPR001680 GO:0005515
Bhi12g00161 1063 SMART WD40_4 790 828 IPR001680 GO:0005515
Bhi12g00161 1063 SMART WD40_4 966 1005 IPR001680 GO:0005515
Bhi12g00161 1063 SMART WD40_4 734 778 IPR001680 GO:0005515
Bhi12g00161 1063 SMART WD40_4 1024 1061 IPR001680 GO:0005515
Bhi12g00161 1063 SMART WD40_4 917 955 IPR001680 GO:0005515
Bhi12g00161 1063 ProSiteProfiles Protein kinase domain profile. 131 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi12g00161 1063 Coils Coil 597 617 - -
Bhi12g00161 1063 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 924 957 - -
Bhi12g00161 1063 SMART serkin_6 182 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi12g00161 1063 SUPERFAMILY WD40 repeat-like 748 1060 IPR036322 GO:0005515
Bhi12g00161 1063 PRINTS G protein beta WD-40 repeat signature 815 829 IPR020472 -
Bhi12g00161 1063 PRINTS G protein beta WD-40 repeat signature 858 872 IPR020472 -
Bhi12g00161 1063 PRINTS G protein beta WD-40 repeat signature 942 956 IPR020472 -
Bhi12g00161 1063 ProSiteProfiles Trp-Asp (WD) repeats profile. 924 964 IPR001680 GO:0005515
Bhi12g00161 1063 ProSitePatterns Trp-Asp (WD) repeats signature. 942 956 IPR019775 -
Bhi12g00161 1063 Pfam WD domain, G-beta repeat 923 955 IPR001680 GO:0005515
Bhi12g00161 1063 Pfam WD domain, G-beta repeat 834 871 IPR001680 GO:0005515
Bhi12g00161 1063 PANTHER PROTEIN SPA1-RELATED 2 4 1063 IPR044630 GO:0009640
Bhi12g00161 1063 Gene3D - 722 1063 IPR015943 GO:0005515
Bhi12g00161 1063 SUPERFAMILY Protein kinase-like (PK-like) 292 562 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00161 K16240 SPA1; protein suppressor of PHYA-105 1 - csv:101211350 1998.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g03428 Bhi-Chr9:86666896 Bhi12g00161 Bhi-Chr12:4723688 0 dispersed
Bhi09g03429 Bhi-Chr9:86668258 Bhi12g00161 Bhi-Chr12:4723688 2.32E-169 dispersed
Bhi10g01057 Bhi-Chr10:21287011 Bhi12g00161 Bhi-Chr12:4723688 7.21E-104 dispersed
Bhi10g01058 Bhi-Chr10:21287011 Bhi12g00161 Bhi-Chr12:4723688 2.63E-104 dispersed
Bhi12g00161 Bhi-Chr12:4723688 Bhi05g01794 Bhi-Chr5:56971926 1.83E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00161 Bhi_Chr12 FPKM 1.949871 1.734551 2.109672 2.160535 2.703317 2.106714 2.433537 3.114976 2.998629 3.059238