Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00166 TATATAAAGTGGTTTTTGTAAAAAATGTAAATCCTCTCTTTTTTTTTTCTCTCAGGCAAAACAACAAACACGCAGGAGGATCTCAAGAGGTTCAACACTTTTGGATTTTGGTGATGGCTTCGAAGCGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCCTACGTCTTGCAGTGCAGGCCCAGTAGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCTCCTGACAGTCCTTATGCAGGAGGAGTGTTTCTTGTCAACATTCATTTCCCTCCAGATTATCCGTTTAAACCACCCAAGGTTGCATTCAGAACAAAGGTCTTTCATCCCAATATCAACAGCAACGGTAGCATATGCCTTGACATACTTAAGGAACAGTGGAGTCCTGCACTAACCATTTCCAAGGTGTTACTTTCGATCTGCTCGCTGCTAACGGACCCGAATCCTGATGATCCTTTGGTGCCAGAGATTGCGCACATGTACAAGACTGACAGAAGCAAGTACGAGGCAACCGCCAGAAGCTGGACCCAGAAGTATGCTATGGGTTAGTGCGCTGCTTTGCTTAGTGTTAGAGGAGGGCTTCTTTCCCAAATGGCTTTTACTTTGAATTATATCTTTGAATCTGTCTCTTTTATCCAATGGGGTTTAGGTATGTTTCCCTCCTGAAAACGCTGCCTGTTCTAAACTTGTTTGTATGGATAAACAAATTTATCTTTAATCTTGAGAGTTTATTCCAATAAAACCCTATCTTGAACCTGAA 771 42.67 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4855974 4862345 - XM_039018912.1 Bhi12g00166 51978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00166 148 PANTHER BNAA01G32320D PROTEIN 3 145 - -
Bhi12g00166 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Bhi12g00166 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Bhi12g00166 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Bhi12g00166 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Bhi12g00166 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Bhi12g00166 148 SMART ubc_7 4 147 - -
Bhi12g00166 148 CDD UBCc 3 142 IPR000608 -
Bhi12g00166 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00166 K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23] - csv:101210687 313.538
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00643 Bhi-Chr2:12460365 Bhi12g00166 Bhi-Chr12:4855974 1.97E-41 dispersed
Bhi10g00418 Bhi-Chr10:9592514 Bhi12g00166 Bhi-Chr12:4855974 5.52E-57 dispersed
Bhi10g00419 Bhi-Chr10:9592514 Bhi12g00166 Bhi-Chr12:4855974 1.09E-57 dispersed
Bhi10g00896 Bhi-Chr10:18338686 Bhi12g00166 Bhi-Chr12:4855974 1.50E-107 dispersed
Bhi12g00166 Bhi-Chr12:4855974 Bhi12g00608 Bhi-Chr12:18814245 1.06E-107 dispersed
Bhi12g00166 Bhi-Chr12:4855974 Bhi12g00607 Bhi-Chr12:18814218 1.06E-107 transposed
Bhi12g00166 Bhi-Chr12:4855974 Bhi01g01436 Bhi-Chr1:29248920 5.06E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g99 Blo02g01137 . . Bda08g00487 Bpe05g00677 . . . . . . . Car02g01180 . . . Cpe05g00618 . . . . . . . . . . . . . . . Cone12ag0264 Cone6ag0831 Cone9ag0830 . Csa05g00222 Chy09g01278 . . . Bda07g01917 . . . Bma05g00850 . . Cmo02g01437 . . . . . . Cpe13g00124 Bhi12g00166 . . Lac11g2026 Hepe06g1497 . Lcy12g1590 . . . . . . . Lsi09g00193 . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00166 Bhi_Chr12 FPKM 166.229279 179.409851 143.014923 135.983261 193.682129 189.096054 186.531036 230.211639 228.169693 224.694626