Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00202 AAACCAAAAACAAAACCCCCAAACAAAAACCTTCAAATCATTTCTCTCTGAATCTAAATTCAAAACAATTTTTTTTTAGTCAATGGAATGGTTCGCTCAATTTTCTGATCCTCTTCCTTATTATGCTCACTGTAATTACAAATCCGAATCCTCTTCCACACTTTCAGACGCCGGAACACCTCCTCAAACGGTGGCCGCTAACTCCGATGAAGAAGTGATTCTAGCCTCCAACCGCCCAAAGCGGCGGGCCGGTCGCCGGGTTTTTAAAGAAACTAGACATCCGGTTTACAGAGGAGTACGGCGGAGGAACAACGACAAATGGGTTTGTGAGCTGAGAGAGCCGAATAAGAAGACGAGGATTTGGCTTGGAACGTACCCAACAGCGGAGATGGCAGCGCGTGCTCACGACGTAGCGGCACTCGCGTTGAGAGGGAAATCGGCTTGTCTCAATTTCGCTGACTCGGCTTGGCGGTTTCCGCTTCCGGCGAGTGATGACCCGGCTGTGATCAGGGAGGCGGCAGCGAGGGCGGCTAATGAGTGTAAGGATGAGGAATATAATGTGGGTCGGGAAGAAGACGATGGCGTTTTGGGTCAGGCGACGGCGGAGCCTAACCAACCGGATTATATCGACGATGAGGCTATGTCGAATATGCCGATGTTGCTTGCCGGCATGGCGGAGGGACTTCTTCTTTCTCCTCCATCTTTTTGTGTCACTGATGACGTGGAGTGGGATGATGTGGCCATGAGTGATGATGTGTCATTGTGGAGCTTTTAGAAGTAGTTAAAGCGAGCAGTCAACCAAGCAACTTAAATGTACAGACTTTTGTTGGAGAAGTCAGGCTTTATATAATTACATTTTTCATTTAATATAAACTTTTGTTTTTTTTTAAAAAAAGAAGATTAGACCCTATCAAACGTGAAATTAAAATTTGTATCAAATCCCACTAAAAAAATAGTA 958 45.62 MEWFAQFSDPLPYYAHCNYKSESSSTLSDAGTPPQTVAANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNNDKWVCELREPNKKTRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRFPLPASDDPAVIREAAARAANECKDEEYNVGREEDDGVLGQATAEPNQPDYIDDEAMSNMPMLLAGMAEGLLLSPPSFCVTDDVEWDDVAMSDDVSLWSF 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5831949 5832906 - XM_039050533.1 Bhi12g00202 52014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00202 230 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
Bhi12g00202 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 1 230 - -
Bhi12g00202 230 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Bhi12g00202 230 SUPERFAMILY DNA-binding domain 68 127 IPR016177 GO:0003677
Bhi12g00202 230 Gene3D AP2/ERF domain 68 126 IPR036955 GO:0003700|GO:0006355
Bhi12g00202 230 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Bhi12g00202 230 CDD AP2 69 127 IPR001471 GO:0003700|GO:0006355
Bhi12g00202 230 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Bhi12g00202 230 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Bhi12g00202 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 230 IPR045277 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g01967 Bhi-Chr11:56298105 Bhi12g00202 Bhi-Chr12:5831949 8.61E-40 dispersed
Bhi12g00202 Bhi-Chr12:5831949 Bhi06g02000 Bhi-Chr6:54954420 8.84E-29 dispersed
Bhi12g00202 Bhi-Chr12:5831949 Bhi12g00203 Bhi-Chr12:5877801 9.43E-35 tandem
Bhi12g00800 Bhi-Chr12:24081018 Bhi12g00202 Bhi-Chr12:5831949 1.32E-66 transposed
Bhi01g01368 Bhi-Chr1:27439030 Bhi12g00202 Bhi-Chr12:5831949 8.84E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2574 PF00847 AP2 1.60E-14 CL0081 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00202 - - bhj:120092445 450.284