Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00221 TTGTTTTTATTTATTTAGTTATTCTATTTTTCTGGCGGATAAACGCCACGGCCCCAAACTTCAGCACCTTCTATCGTCTTCTTCACTACTCCCACAATTTCAGAAAACACAAAGAAAAGCTCCATAGCTCAATCTCATACCCATAATCTCCTTAATTCAACCTCCTCCAAAACTTCATCACCTTTAATTACATTGAGTTGAATGACACTGATCACGGTCAAATAAGTGTAATTTTTCATTACAATTCCCTTTCCAAGAAATGGACGGTCGCGCTCTAACGGCCTCCTCCTTCTTCACCCCAATCGATTTATTACGACCCAGAAGGAAAACTGTTAGAAATCTGTGTTTTAATGGCAGACACAGTAAGTTTTCGGTTCTTGCTTCCAAAGAAGAGGCTGAACTCGACCGTTGGGACCAAATGGAGCTCAAGTTTGGCCGCTTGATTGGGGAAGACCCCAAATTAACATTGGCCAAGATAATGAGCAAAAAAACGAATCCGGATGTTTCTTATCTAGAAGTTGAGAAATCGTTTTACCAGAAGAAGGGTAAGTCTAACGAGGTAGAGGAACTTTCTCTTGATGGTTTGAATTTGGTCAGACCACAGTTAAAGAAGGAAATGAAGTTAAAGGCTGCCAGTAAGCCACCTGCACCAGATTTAAAGAAACCAAGCCAAGTAGTTGGAAAGGTAGCAGTTAGTCCTAAAGGTAGGGTTCCCAATGTTATTTTGAGAAAACCAACTATTTATAATGAGGACGATGTTGAAGATAAGCCGTCGCGGATAAGAATGAAGCCGAATTTATCATTGAAAATGAGCAATGCATCGACAAAGGAGAAATATAGTGATATGACACTGTTGAGGAAGCCGGAACCAATGACTTCAAATGAAGTTATTGATGAGAAAGAAAAGCTCTCTGGTGAGGGGTATGTTGATATTGTTGAGAATATTGAAAATCGAGTTAGTAAGGGATCGACAAGTGACCTAGCTGATGGTTTTACTCTTTCTAAGAAGCCAGAAATAGGAGGTGACAAAACAAGATTTGCAGAAAGTGAGACGGTTGATGGTAAAGTGGAGAATGACGTTGAAGATGTATACATCCTAAAAAGGCCTTTAAATGCGATGTCTGGCATGTCTGAAGAAACTGAGGTAGGTTCATCAACAAATGAAAACGGGAAGGATATTGATTATTCTGCTATAGATTATGTGAAGGACTCAGCAGTGTTGAGCGAATCATTCAGTGATATTTTGGATTCAACAATGAAGGTGTCCAAAAAAGCTACATTATTGGGTAAACCAAGAAGAGTAGATCATTCTTCTAAGGAAACAATAAAACTCAGTAGAGAAGAGGCCTCCACCCCTGAAACGGACGTCAGTGGTGCTGTTGAGACAGAGAACTTCTCTGCTATCCCTGCTTTGGAGGAACATGAACTTGCTGACTGGACTAAAGCAGAGGATCTGGCAAAGTCAGGAGACAGAGCCGACGTGGAAGTAATAAGCTCGAGTACTCGAGGTTTTGTTGTATCATTTGGCTCCCTAGTAGGATTTATTCCGTACCGTAATCTTGCTGCCAAGTGGAAGTTCTTAGCTTTTGAGTCATGGCTAAGACAGAAAGGTTTGGATCCATCAGTATACAAGCAAAACTTAGGAACTATTGGAAGTAGTGATGGTGCAAGCCAGCCCTTTGCCAGTACTAGGCAGGATTCGGAAATTGATGTAAAAGATGGGGGAGAACTCACACCTGATATGAAATTGGAGGATCTTCTTCAAATTTATGATCGAGAGAAAATCAAATTCTTGTCATCATTTGTTGGCCAGAAAATCAAAGTAAATGTGGTGTTGGCCAACAGAAAATCAAGGAAGCTTATCTTTTCCGTAAGGCCAAAAGAAAGGGAGGAATTAGTCGAGAAAAAGAGGAGTTTAATGGCGACGCTGCAAGTAGGTGACGTTGTCAAATGCTGCATCAAGAAGATTGCTTATTTTGGTATCTTTGTAGAGATCGAAGGAGTGCCTGCTTTGATTCATCAGACAGAGGTTTCCTGGGATGCTACTTTAAACCCTGCATCATACTTTAAAATTGGTCAGGTTGTAGAGGCAAAAGTTCATCAATTGGATTTTTCACTTGAACGCATATTCTTATCGTTGAAGCAGATAACACCAGACCCGCTAGCTGAAGCATTGGAGTCTGTAGTTGGTGATCATGATCCCATGGATGGAAGATCAGATTCAGCCGAAGTAGATACCGAGTGGTCTGATGTAGAATCTCTCGTCAAGGAACTGCAAAATACTAAAGGTATTGAGGCTGTATCCAAAGGACGTTTTTTCCTTAGCCCTGGATTGGCTCCAACCTTTCAGGTTTATATGGCTTCTATGTATGAAAATCAGTACAAATTACTTGCTCGATCTGGTAACAAAGTACAAGAGCTGATGGTTGAGACATCTTTGGATAAAGAAACAATGAAATCAGTTATCTTAACTTGCACCAACAGGGTAGAGTAGCCAGTTTCTTGAGTTTTGAAGCTTTTGCTTTGAAGGAAAATTTGATTGTGAAAGGTACATAAAGCAGCAAGCAGCATTAGAACTGATCTTCAATAGAAGAATAGGAAAAATAGTTCTCCTTCAATTTGTTTCATAGTGAGAAGAAGAAGCCTATCTTTTTTTGCCCAATCTCTTGTGGGAAATAAAAAGAACTTGGCTACTGTTTCTTAAAATCAAACCACATCATGATATTTCTCTTCATTCAATAGAAATTCAACATCTTTTTCATTGTAAACTTGTAGTTATGATCCTGCCTGAAACCATTCAAGATGTATTATCTTTGTCTTTTGTGAGTATCCTTTCAAAAGATCAGATGCAAAGGCTTCATGGTTGGGCTTTAAATCTTTTGGTCTTTGTGGTGTGAAAAGAATGGAAGGATCTTCAGTGATACTATTCGACATTTGAGAGGTTCATGGTTTGTATTGGTGTAAATGTTCATATTGTTTTCA 2982 39.4 MDGRALTASSFFTPIDLLRPRRKTVRNLCFNGRHSKFSVLASKEEAELDRWDQMELKFGRLIGEDPKLTLAKIMSKKTNPDVSYLEVEKSFYQKKGKSNEVEELSLDGLNLVRPQLKKEMKLKAASKPPAPDLKKPSQVVGKVAVSPKGRVPNVILRKPTIYNEDDVEDKPSRIRMKPNLSLKMSNASTKEKYSDMTLLRKPEPMTSNEVIDEKEKLSGEGYVDIVENIENRVSKGSTSDLADGFTLSKKPEIGGDKTRFAESETVDGKVENDVEDVYILKRPLNAMSGMSEETEVGSSTNENGKDIDYSAIDYVKDSAVLSESFSDILDSTMKVSKKATLLGKPRRVDHSSKETIKLSREEASTPETDVSGAVETENFSAIPALEEHELADWTKAEDLAKSGDRADVEVISSSTRGFVVSFGSLVGFIPYRNLAAKWKFLAFESWLRQKGLDPSVYKQNLGTIGSSDGASQPFASTRQDSEIDVKDGGELTPDMKLEDLLQIYDREKIKFLSSFVGQKIKVNVVLANRKSRKLIFSVRPKEREELVEKKRSLMATLQVGDVVKCCIKKIAYFGIFVEIEGVPALIHQTEVSWDATLNPASYFKIGQVVEAKVHQLDFSLERIFLSLKQITPDPLAEALESVVGDHDPMDGRSDSAEVDTEWSDVESLVKELQNTKGIEAVSKGRFFLSPGLAPTFQVYMASMYENQYKLLARSGNKVQELMVETSLDKETMKSVILTCTNRVE 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7260119 7266804 + XM_039018792.1 Bhi12g00221 52033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00221 744 ProSiteProfiles S1 domain profile. 560 628 IPR003029 GO:0003676
Bhi12g00221 744 SMART S1_6 558 628 IPR022967 -
Bhi12g00221 744 SMART S1_6 401 539 IPR022967 -
Bhi12g00221 744 Pfam S1 RNA binding domain 557 628 IPR003029 GO:0003676
Bhi12g00221 744 Gene3D - 541 631 IPR012340 -
Bhi12g00221 744 MobiDBLite consensus disorder prediction 345 371 - -
Bhi12g00221 744 SUPERFAMILY Nucleic acid-binding proteins 546 651 IPR012340 -
Bhi12g00221 744 MobiDBLite consensus disorder prediction 345 364 - -
Bhi12g00221 744 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 20 744 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00221 - - - csv:101217667 1310.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02758 Bhi-Chr1:68397522 Bhi12g00221 Bhi-Chr12:7260119 3.47E-20 dispersed
Bhi12g00221 Bhi-Chr12:7260119 Bhi04g02179 Bhi-Chr4:59973657 2.92E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g361 . . . . . . . . . . . . Car02g01235 . . . Cpe05g00315 . . . . . . . . . . . . . . . Cone12ag0318 . . . Csa05g00302 Chy09g01202 . . . . . . . . . . Cmo02g01509 . . . . . . . Bhi12g00221 . . Lac11g2118 Hepe06g1567 . Lcy12g1675 . . . . . . . Lsi09g00285 . . Cme09g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010174 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00221 Bhi_Chr12 FPKM 0.0 0.0 0.0 0.447366 45.637474 36.734039 47.561806 0.0 0.0 0.0