Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00234 TTTTTTTTTTTTTTTTCTATCCATTTCTTTAGAATCCCTTTTTCTCTGCTTCTTTTCCTTTTTCTTCTCAGTCCAAAACTTCTTCTTCATCTCTTCTCTTTTGGGTTCTTCTCATTTCCCTTTTTTTCCCCTGTTCTCATTCTTGGGCTTTTTATCAATCTTTGAATTTTCATCTACTTCCTCTCTGTTGGGTACTTCTGAAATAAAAATTTAACTTCACAATATCACTTAATTCCCCCTATTCCTCTCTGTAATCTGTACCAAACCACTGAAGTGGAGTTATTACTTCTTCTTTCACTCTCTTTCACAGAACCCAAATCTTCAACTTATTTGGGTTTCCTTTTGGTTCTCTCTTCTTCTCTCATTTCTTTTGTTTCTGGGTTTGTTTCATTCTTGCTCTTTTGAATGTGAACCGCCACTGAAACTTGATTTTCTTGTGGAAACTGAGAGAAGAAGATGGAATCGTTTGCTTCTCTTGTGGTGCTTCTCTGTTTAATTTTGGGGCTATTTGGAATTTGTGATTCTATTTCTTCCAATGAAGTCATTGCTCTTGGGGCCTTCAGGTCAGAAGTATTTGAAGATCCATATCAAGTCTTCTCCAACTGGAACAGCCTTCAACCAGAACCTTGCTTATGGTCTGGCATTTCATGTTCTCCAACTGGAGACCATGTTGTAAAGATTAACATTTCACATTCTGCTATTAAAGGGTTTCTTTCAGGAGATTTGGGTCAACTCAGCTTCTTGGAGGAACTAATTTTACATGGAAATAAGCTGCGTGGTCCAGTACCCAAGGAGTTAGGCTACTTAAAGAACCTCAGAATCTTGGACTTAGGGATGAATCAATTCACAGGTCCAATTCCTCCAGAGTTCGGGAATTTAACAAAAATTGTGAAAATAAACCTCCAGTCTAATGAGTTCACTGGTAAGCTGCCTCCTGAGCTGGGAAATTTGAGATACATTGAGGAACTAAGGCTGGATAGAAATAAGCTTGGAGGAACTGTTGGCCATTCAGATCATACTGGACTGTACGTGTCAAAAACTAACTTGACTGGGTTCTGTGGCTCATCTCAGCTAAGAGTTGCTGATTTTTCATATAACTTCTTTGTTGGGTGCATACCGAAGTGCTTGGAGCGTCTTCCAGGGTCAAGTTTCCAAGGGAATTGCCTCCATAAAATTAACTCCAAACAACGTCCTTCAGCAGAGTGTGCTATGACTATGAGACATCCAGGAAGCAACGGACGGAACCATAACCTCCATCACCAAGCAACATCGAAACCAATCTGGCTTTTGGCCCTTGAGATAGTAACAGGAACTCTGGTGGGTTCTCTCTTCCTTGTTGCTGTTCTCACTGCAGTCCAGAAGTTCAATCGAAAATCCTCCATGATATTGCCCTGGAAGAAAGCAGGAAGTAGGAAATACTATGCTCCAGTATATATAGATCCTGAGATTTTAAAGGATGTAACGAGATTTAGTCGACAAGAACTTGAACTAGCTTGTGAAGACTTCAGCAACATAATTGGCTCCTCTCGAGACAGTTTGGTATATAAGGGCACCATGAAAACTGGACCCGAGATTGCAGTTATCTCAATGAGCATGAAAGAAGAACTATGGACAGGATACCTTGAACTCTATTTTCAGACAGAGGTAGCGGATTTGTCAAGAATCAACCACGAGAATACAGGAAAATTACTGGGTTATTGTAGAGAGAGTACTCCATTTACAAGGATGCTAGTTTTTGAGTATGCATCAAATGGCACATTATATGAGCATCTACATTATGGAGAAGCATGTCAGTTATCTTGGACGAGACGGATGAAGATTATTTTAGGCATCGCGCGTGGACTCAAGTATCTTCACACAGAACTCCAACCTCCATTCACCATATCTGAGCTGAATTCCAACGCTGTATATCTTACAGATGATTTTTTTCCCAAGTTGATAGACTTTGAAAGTTGGAAGACCATTCTTTCACGATCGGAAAAGAACTCAGGATCTATAGCCAGCCAAGGTGCAATATGTGTTCTTCCAAACTCTCTAGAAGCACGACATCTCGACGTGCAGGGTAACATCTATGCATTCGGTGTCCTTCTACTTGAAATAATCAGTGGGAGGCCTCTGTACTGCAAGGACAAAGGAAACTTGGTAGATTGGGCCAAGGACTATATCGAAATGCCGGAAGTGATGTCTTATCTTGTTGATCCCGAACTGAAGCATTTTAGATACGAAGATCTCGAGGTAATATGTGAGGTGGCAAACCTTTGCATCCATCAGCGGCCGACCAAACTGCTATCGATGAAGGAACTCTGCACCATGTTAGAAACTAGAATTGATACCTCTGTTGCCATTGAGTTTAAAGCATCTTCTTTGGCATGGGCAGAGCTTGCACTCTCTTAGAAGAAGTGAAGGTATACATAGATTTGACATATACAAAAGTTGTAATACTCTCCTTTTCCATTTTCTTAACCTTTTTCTTGATTTTTTTTTCTTTTTGCTTTTTTAAGTTTCTATATTCCTTGTACATGTTCAATCCTAGAGCAGGCTGTATAACTCATAGTATCAAAAGTATGCCAATATCACAGTAGCTATAATCAGAGTGTTGAATCACAAATCAACTATGAAGTTTGAACAAA 2630 39.77 MESFASLVVLLCLILGLFGICDSISSNEVIALGAFRSEVFEDPYQVFSNWNSLQPEPCLWSGISCSPTGDHVVKINISHSAIKGFLSGDLGQLSFLEELILHGNKLRGPVPKELGYLKNLRILDLGMNQFTGPIPPEFGNLTKIVKINLQSNEFTGKLPPELGNLRYIEELRLDRNKLGGTVGHSDHTGLYVSKTNLTGFCGSSQLRVADFSYNFFVGCIPKCLERLPGSSFQGNCLHKINSKQRPSAECAMTMRHPGSNGRNHNLHHQATSKPIWLLALEIVTGTLVGSLFLVAVLTAVQKFNRKSSMILPWKKAGSRKYYAPVYIDPEILKDVTRFSRQELELACEDFSNIIGSSRDSLVYKGTMKTGPEIAVISMSMKEELWTGYLELYFQTEVADLSRINHENTGKLLGYCRESTPFTRMLVFEYASNGTLYEHLHYGEACQLSWTRRMKIILGIARGLKYLHTELQPPFTISELNSNAVYLTDDFFPKLIDFESWKTILSRSEKNSGSIASQGAICVLPNSLEARHLDVQGNIYAFGVLLLEIISGRPLYCKDKGNLVDWAKDYIEMPEVMSYLVDPELKHFRYEDLEVICEVANLCIHQRPTKLLSMKELCTMLETRIDTSVAIEFKASSLAWAELALS 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7490495 7495239 + XM_039050542.1 Bhi12g00234 52046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00234 645 PANTHER PROTEIN MALE DISCOVERER 2 8 645 - -
Bhi12g00234 645 Gene3D Phosphorylase Kinase; domain 1 327 429 - -
Bhi12g00234 645 SUPERFAMILY L domain-like 27 228 - -
Bhi12g00234 645 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Bhi12g00234 645 Pfam Protein tyrosine and serine/threonine kinase 351 566 IPR001245 GO:0004672|GO:0006468
Bhi12g00234 645 Pfam Leucine Rich Repeat 119 141 IPR001611 GO:0005515
Bhi12g00234 645 Gene3D Ribonuclease Inhibitor 140 256 IPR032675 -
Bhi12g00234 645 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 645 - -
Bhi12g00234 645 ProSiteProfiles Protein kinase domain profile. 348 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi12g00234 645 Gene3D Transferase(Phosphotransferase) domain 1 430 635 - -
Bhi12g00234 645 SUPERFAMILY Protein kinase-like (PK-like) 327 621 IPR011009 -
Bhi12g00234 645 Gene3D Ribonuclease Inhibitor 28 139 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00234 - - - csv:101221772 1175.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02320 Bhi-Chr1:56890058 Bhi12g00234 Bhi-Chr12:7490495 0 dispersed
Bhi10g00837 Bhi-Chr10:16907883 Bhi12g00234 Bhi-Chr12:7490495 2.54E-102 dispersed
Bhi12g00234 Bhi-Chr12:7490495 Bhi06g00251 Bhi-Chr6:5907002 7.41E-57 dispersed
Bhi12g00233 Bhi-Chr12:7490494 Bhi12g00234 Bhi-Chr12:7490495 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88477 PF07714 PK_Tyr_Ser-Thr 2.20E-17 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00234 Bhi_Chr12 FPKM 2.553279 2.610376 6.657908 5.291067 1.969678 1.767382 2.154001 8.040117 7.923609 7.85846