Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00245 TTTCATTTTCTAATTTTTCACTTTTTGTGTATTCTGCGCCTTTTTCCCTCTCTTTCTGTGCTCATAATTCGAAGATTTGGATAAAACTTCATTGTATTTTCGCATGAATTCGTGTGGTATTCAAATTAAAGATTCTGGGAACTTATCTGTGGCTGAAACGATTCTAAACGAGTGTGTATTAGGGACTTATTTGATTTTAGTTCTGATGTTTTATTTGATTAACGAAGAATCAAGGGGAACTGTGGTGAAGACTATGGCTGAATTTGATGCAAAGGGAAATGATATCAGCCTTAGCATATACAAGGGTAAAGTCCTGCTCATTGTCAACGTTGCTTCTAAGTGTGGGATGACAAATTCGAACTATCTGGAGTTGAACCAACTATACGAGAAATACAAAGAACACGTTATTGCAGGTTTGGAAATTCTGGCATTTCCATGTAATCAGTTTGGCGACGAGGAACCAGGAAGTAATGATGAGATCAAAGATTTTGTCTGCAGTCGTTTCAAATCAGAATTTCCAATTTTTGATAAGATTGAAGTCAATGGGAACAATTCTGCCCCACTCTACAAATTTTTAAAATTGGGAAAATGGGGAATATTTGGGGACGATATTCAGTGGAATTTTGCCAAGTTTCTGGTTGACAAGGATGGGAAAGTAGTCGACCGTTATTACCCCACAACATCTCCTCTCAGCATTGAGAATGATATCAAGAAGCTGTTGGAGATCTTATGAGCGATTGGACATACGAGTTTAAGCATTTACATTCAACTTGTTCCTGAAATACTGCACGATGGTGATCAATCACGATGTGAAGTCACAATGGGTTGTGTTTGTTATAACATTGTTGAATTTTGAGTTGAGAACTAATCAGTGTATGGATAAGATTCATGAATATATTATTGAAGATCATATATAATTGATCTATAATCTATAAAATTCCACATAAACACATATTGAATGGA 963 35.62 MNSCGIQIKDSGNLSVAETILNECVLGTYLILVLMFYLINEESRGTVVKTMAEFDAKGNDISLSIYKGKVLLIVNVASKCGMTNSNYLELNQLYEKYKEHVIAGLEILAFPCNQFGDEEPGSNDEIKDFVCSRFKSEFPIFDKIEVNGNNSAPLYKFLKLGKWGIFGDDIQWNFAKFLVDKDGKVVDRYYPTTSPLSIENDIKKLLEIL 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7650692 7653862 + XM_039051141.1 Bhi12g00245 52057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00245 209 ProSitePatterns Glutathione peroxidases signature 2. 108 115 IPR029760 -
Bhi12g00245 209 PANTHER GLUTATHIONE PEROXIDASE 8-RELATED 51 208 - -
Bhi12g00245 209 Pfam Glutathione peroxidase 52 159 IPR000889 GO:0004602|GO:0006979
Bhi12g00245 209 Gene3D Glutaredoxin 42 209 - -
Bhi12g00245 209 SUPERFAMILY Thioredoxin-like 54 206 IPR036249 -
Bhi12g00245 209 ProSitePatterns Glutathione peroxidases active site. 68 83 IPR029759 -
Bhi12g00245 209 ProSiteProfiles Glutathione peroxidase profile. 38 209 IPR000889 GO:0004602|GO:0006979
Bhi12g00245 209 PANTHER GLUTATHIONE PEROXIDASE 51 208 IPR000889 GO:0004602|GO:0006979
Bhi12g00245 209 CDD GSH_Peroxidase 55 202 IPR000889 GO:0004602|GO:0006979
Bhi12g00245 209 PRINTS Glutathione peroxidase family signature 66 83 IPR000889 GO:0004602|GO:0006979
Bhi12g00245 209 PRINTS Glutathione peroxidase family signature 170 179 IPR000889 GO:0004602|GO:0006979
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00245 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - csv:101220211 290.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g00242 Bhi-Chr12:7650530 Bhi12g00245 Bhi-Chr12:7650692 1.06E-112 dispersed
Bhi12g00243 Bhi-Chr12:7650530 Bhi12g00245 Bhi-Chr12:7650692 1.38E-108 dispersed
Bhi12g00244 Bhi-Chr12:7650692 Bhi12g00245 Bhi-Chr12:7650692 1.73E-149 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g330 . . . . . . Bma07g01647 . . . Cma02g01460 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0773 Cone9ag0779 . Csa05g00289 Chy09g01217 . . Blo19g00321 . Bda09g00042 . . . Bma12g00393 . Cmo02g01495 . . . . . . . Bhi12g00245 . . . . . . . . . . . . . Lsi09g00266 . . Cme09g01754
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00245 Bhi_Chr12 FPKM 11.627572 12.430561 6.346336 7.720873 15.225243 17.969404 12.897855 1.790502 1.741825 1.275301