Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00290 GCCGTCTTTCTCACGGCATAATTCCATTAATCATCTCTTCCAAATTTCTCTCTTCTTCTTCCTCTGTTTACAGTTCCGCCATGGGTTTCCCTGCAAGCTACACTGAGCTTCTTCTTCCCAAGCTCTTCATTCATGTACTCTCCTTCCTCGGTTTCCTCAGAAAGCTGATCTCCCTCCTCTTCCGCCTCTTGGGTCTCCAAGATTTCCTCGAACCCGACATTCCTTGGCCCAATCACCCCGATTCCTTCCCCACCGGACCCTTCACCGACCTCGACCCTCTCTCCGCCGCCGTTCTCCGTGAGATTCTCCCCGTCGTCAAGTTTTCCGAGCTTTTGGATCCACCGGAGAGCTGCGCTGTGTGTCTCTACGAGTTCGAGGCCGACGATGAGATCCGCCGCCTCGCTAACTGTCGCCACATCTTCCACCGCGGATGTCTCGATCGGTGGATCGGTTACGGTCAGAGAACCTGCCCGCTGTGCCGGACGGTGTTTATTCCTCCCGATTTGCGGAGTGGTGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTTGAAGCTCTCCACACCGATTCTTCTTCTTCTTCTTCTTCAAGTCTTCTCTCCGCTGGTTTGTAGCTTTTGGAGATTTGATTGATTTTTCTTTTTGTTGATTTTGCTGCTCTGCCTCTCATCAATCGATATCGGAAAAACATAAATAAAATAAGGGGAAACAGAGATGAGAGATGGAGATGATTGAGTTTGATGGGGAGGGAATATGTTTGTTGTTCTTCTCTGTACATACCAAAAAAAAAAAAAAAAAACGTTCCTAAAAGGAACTGGAAAATCAAAATCAAAATCAAATCAAATCAAAATCAATTACAGGTCTCAGAATTAGTTCAT 887 46.67 MGFPASYTELLLPKLFIHVLSFLGFLRKLISLLFRLLGLQDFLEPDIPWPNHPDSFPTGPFTDLDPLSAAVLREILPVVKFSELLDPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRSGGCNFDDRLWEDSEIFEALHTDSSSSSSSSLLSAGL 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8446762 8447648 - XM_039050843.1 Bhi12g00290 52102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00290 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 137 IPR013083 -
Bhi12g00290 180 Pfam Ring finger domain 90 134 IPR001841 -
Bhi12g00290 180 SUPERFAMILY RING/U-box 72 140 - -
Bhi12g00290 180 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Bhi12g00290 180 SMART ring_2 91 133 IPR001841 -
Bhi12g00290 180 CDD RING-H2 91 134 - -
Bhi12g00290 180 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 144 - -
Bhi12g00290 180 SMART ringv_2 90 134 IPR011016 GO:0008270
Bhi12g00290 180 PANTHER - 1 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01229 Bhi-Chr3:25244318 Bhi12g00290 Bhi-Chr12:8446762 3.92E-16 dispersed
Bhi10g01292 Bhi-Chr10:30600945 Bhi12g00290 Bhi-Chr12:8446762 1.40E-14 dispersed
Bhi10g01293 Bhi-Chr10:30600945 Bhi12g00290 Bhi-Chr12:8446762 1.40E-14 dispersed
Bhi12g00070 Bhi-Chr12:1930737 Bhi12g00290 Bhi-Chr12:8446762 5.78E-17 dispersed
Bhi12g00290 Bhi-Chr12:8446762 Bhi12g02037 Bhi-Chr12:63549725 1.46E-13 dispersed
Bhi12g00290 Bhi-Chr12:8446762 Bhi12g01880 Bhi-Chr12:60269192 1.43E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00290 K16281 - csv:101215533 315.079