Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00309 TCACAATAATGGCGTCCTTTCTATTTCCTATTAAAATCCAAACGTTACCCTTTTGCCTTATTTTCTTATTTAAGCCATTCTTCTTCTTCTTCTTCTTCAACAATTCAAATTCTCAGACCCATCTCAATATGAGGAAAGTTGTGTTGAAGTTGGACATACATGGTGACAAAGGAAAACGAAAGGCTTTGAAAGCAGTCTCTGTTCTTCAAGGAATTGAATCGATTGCCATGGACATGAAGGAGAAGAAGCTAACAGTAATAGGGGAAGTTGATCCGGTTGACGTAGTTGCAAAGGTTCGAAAGCATTGGCCGAACGCCGATATCGTCAGCGTCGGCCCAGCGAAGGAAGAGAAGCCTGCAGCAAAAGGAGGAGAGAAGCAAACAGGAAAGATTGAAAGTGAAGCAATTGAAGAGATGGTTAAATTGCACCAATGCTATGGTTATACTGGTTATGGAGGTCCTCATTATCGTGTATATAGTGTAGAGGAGAATCCTCATTCTTGTACCATATCTTGAATAGTATCGATTAGTTCTTAGATTGAGTATCAAATTGTTAGTGGCAAATTAAATATGTATACCTCAACTACCATTTATAATATTTTATATAATGTTCTTCTTTGGTCCCA 625 38.24 MASFLFPIKIQTLPFCLIFLFKPFFFFFFFNNSNSQTHLNMRKVVLKLDIHGDKGKRKALKAVSVLQGIESIAMDMKEKKLTVIGEVDPVDVVAKVRKHWPNADIVSVGPAKEEKPAAKGGEKQTGKIESEAIEEMVKLHQCYGYTGYGGPHYRVYSVEENPHSCTIS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8986907 8987762 + XM_039019813.1 Bhi12g00309 52121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00309 168 Pfam Heavy-metal-associated domain 49 100 IPR006121 GO:0046872
Bhi12g00309 168 SUPERFAMILY HMA, heavy metal-associated domain 40 100 IPR036163 GO:0046872
Bhi12g00309 168 Gene3D - 37 114 - -
Bhi12g00309 168 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 41 167 - -
Bhi12g00309 168 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 41 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00309 - - - bhj:120068116 290.426
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g01177 Bhi-Chr2:27579719 Bhi12g00309 Bhi-Chr12:8986907 4.67E-17 dispersed
Bhi10g01280 Bhi-Chr10:29901172 Bhi12g00309 Bhi-Chr12:8986907 7.27E-07 dispersed
Bhi10g01284 Bhi-Chr10:30378231 Bhi12g00309 Bhi-Chr12:8986907 7.77E-06 dispersed
Bhi12g00306 Bhi-Chr12:8887973 Bhi12g00309 Bhi-Chr12:8986907 1.39E-26 dispersed
Bhi12g00309 Bhi-Chr12:8986907 Bhi12g02017 Bhi-Chr12:63308562 3.15E-28 dispersed
Bhi12g00308 Bhi-Chr12:8938300 Bhi12g00309 Bhi-Chr12:8986907 1.66E-53 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g39 . . . . . . . . . . . Cma15g01252 . Car15g01129 . . . . . . . . . . Cla07g00757 Cam07g0809 Cec07g0870 Cco07g0847 Clacu07g0790 Cmu07g0797 Cre07g1153 . . Cone6ag0809 . . Csa05g00244 Chy09g01260 Cme07g01617 . . . . . . . . . . Cmo15g01127 Cma06g01085 . . . . Cpe13g00133 Bhi12g00309 . . . Hepe06g1514 . Lcy12g1614 Cla01g00230 Cam01g0236 Cec01g0228 Cco01g0242 Clacu01g0233 Cmu01g0226 Cre09g2284 Lsi09g00219 Csa04g00608 Chy07g01204 Cme09g01797
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000207 7 7 3 10 7 4 5 6 5 3 4 5 6 7 6 6 5 9 5 5 7 5 5 4 6 4 5 12 6 6 175
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00309 Bhi_Chr12 FPKM 13.65075 14.004187 27.486736 28.191364 15.337922 12.98739 13.88916 35.748291 33.629757 30.996496