Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00327 ATGCAAGAACCTGGGTTAGGAATGATGACGGCTGCCGGTGGCTCTAGTGGTGCCTTAAGTGGCGATGTTTCCGTTTCCGGCGAGGGAGTTCATAACGGTCAACTGAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACCCCCATTGATCAGCTTCCGATGATCGACGCTCAGCTTTCTCAATCGCACCATATTTTGCGATCTTATGCTTCTTCTCAGCAGCATCACCAAAATGCTCATTCCTTAACGCCTCACGAGCGCCAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTTTTGTGTTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTTGAAGCTGTTATGGCCTGCCGTGAAATTGAAAATACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGCACCGGTGCAACAATGTCAGATGATGATGACGACGTTCCGATGGACTTCTCGCTTGATCAATCCGGCGCTGATGCGCACGACATGATGGGGTTCGGGCCACTGCTTCCAACCGAATCTGAAAGGTCATTGATGGAGAGGGTCCGACAAGAATTAAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCAGGGAAGTTACCTGGGGATACAACTACAGTTTTGAAAAATTGGTGGCAACAACATTCTAAGTGGCCTTACCCAACTGAAGATGATAAGGCAAAGCTGGTGGAGGAGACAGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCCTTGAAATCCAAGCGCAAGAGATAAAAAGAAGAGAAACAGAAAATTTTTCATCAAATTATAATATGAAATATGTTATAGCTTTTGGTAAAAGGTTCTGACAGAGTAACATGCAGAAACATGGGATTAAGCTTACTGTAAAATGAGGTTAGAGAGTCGAGCATATTGTGACAGAGATTTGATTAACATGTCTTTTCTTTAAGGTTGTAAATTGTTGGCTTTTTTAATACCATCAAATTCTAGATTTCTTGCGCTTTCATATTTTTAAA 1148 42.94 MQEPGLGMMTAAGGSSGALSGDVSVSGEGVHNGQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDDDDVPMDFSLDQSGADAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9196888 9200532 - XM_039020029.1 Bhi12g00327 52139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00327 301 Gene3D - 223 297 - -
Bhi12g00327 301 SMART HOX_1 226 291 IPR001356 GO:0003677
Bhi12g00327 301 SUPERFAMILY Homeodomain-like 226 291 IPR009057 -
Bhi12g00327 301 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 301 - -
Bhi12g00327 301 SMART KNOX1_2 33 77 IPR005540 GO:0003677|GO:0005634
Bhi12g00327 301 CDD homeodomain 227 288 IPR001356 GO:0003677
Bhi12g00327 301 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Bhi12g00327 301 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Bhi12g00327 301 SMART KNOX2_2 93 148 IPR005541 GO:0003677|GO:0005634
Bhi12g00327 301 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677|GO:0005634
Bhi12g00327 301 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Bhi12g00327 301 Pfam KNOX2 domain 97 147 IPR005541 GO:0003677|GO:0005634
Bhi12g00327 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g02966 Bhi-Chr9:77103515 Bhi12g00327 Bhi-Chr12:9196888 1.83E-133 dispersed
Bhi09g02967 Bhi-Chr9:77104003 Bhi12g00327 Bhi-Chr12:9196888 1.83E-133 dispersed
Bhi12g00327 Bhi-Chr12:9196888 Bhi02g00452 Bhi-Chr2:8715029 3.25E-32 dispersed
Bhi12g00327 Bhi-Chr12:9196888 Bhi04g00027 Bhi-Chr4:648909 1.97E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2584 PF03791 KNOX2 7.60E-18 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00327 - - csv:101206054 571.237