Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00331 GGTTTCTCAAGTGGTCGCATTTATTCTGTTTGGTTTCTTTTTTTGGGAGGTTCCTATTTTCTTACTTGAGTTTTCCCAAAAAAGAAAGAAAGAGATCAGGTTCTTCGTCAATTCAAATTCTCTTTCCTTCTAAAAATTGTATCTTTTATCTATCTTTCTAATCCTTTCTCATTTCTTATTTATACCCCCATTTCTAGGGTTCTTTCTAGACTCTCCCTTCAAAAAAAAAAGAGAAAAAAGAAAAAAATTAAATCCCTCTTCCTTTTAGGTCTTCTCTGATTTTTTCCCCATTTATCAACCTTACTCCTCAAGATTTACTCATAGGTAAATAGCTTTAAGAGCGAAAATGGTGAGAGGAAAAACACAAATGAAGCGCATAGAGAATGCTACAAGCAGGCAAGTTACCTTTTCAAAGCGCAGAAATGGCTTACTCAAGAAAGCTTTTGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAATTTTCCAATTGCAGTATGAACAAGACAATTGATCGCTATCAGAACAGAACCAAAGATTTGATGGCAAGTAACAACGCAGTTGAAGATATGCAGTTGGAGAAGGAATATGACTCCTTTAGCATGACTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGAAAACTGTTGGGAGATGGCTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAAAGGCAACTTGAAAGAAGCTTAAGCAAAATTAGGTCTAGAAAGTATCAAATGCTGAAGGAAGAAATTATGAAGCTGAAAGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTAGAACTGAATCATCAAAAAAACAAGAAAGCAATCAGAGATCAGAATCATCAAACCATCAGGAGATAATGGATGTGGAAACTGAGTTGTTCATAGGACCACCAGAAAGAAGAAGCAAAAATAATAATAACAATGGCTTCCTGTAGAGTTTCATCCAACCTCACTTAACAACAAAATGGCTTGTTTCCAAAATCCCTTGAAAATTTCCCAAGAAAATAATATTACAAAAAAAAAAAAAGGTGAGTTTTTATTTACATGCAGCATTTATTTTTAACACTAAAAGTGAAAAAACCCAACATGACCAACCAAAAAAAAAAAAAAAAAAAAAAATAGAAACTGAAAATGGTTTCTGATAAAATGTTTCATTATATACTTTATGAGAAAAAAAAAGTATATAGATGAAACTTAATTACCTGTATATTTAGGAACTGTGTACCTTGTTGGATACTGTCTCTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTATTATTCTCAGCTTTTGCTTGTGATTTTCATTTTACAACATGTTTCTGTTTCTCCTTTTGTGGTTACTTTACTTTTTTAAAAACATGTGGAAATTTGGTGTCTAGATTGTGAAGTTTGAATGGGAATTTGTCTATATTTGAAGGCTA 1488 32.53 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKDLMASNNAVEDMQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCSIDELQQLERQLERSLSKIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVRTESSKKQESNQRSESSNHQEIMDVETELFIGPPERRSKNNNNNGFL 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9514540 9521251 + XM_039050954.1 Bhi12g00331 52143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00331 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi12g00331 218 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Bhi12g00331 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi12g00331 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi12g00331 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi12g00331 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi12g00331 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi12g00331 218 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi12g00331 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi12g00331 218 MobiDBLite consensus disorder prediction 173 193 - -
Bhi12g00331 218 Coils Coil 143 170 - -
Bhi12g00331 218 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi12g00331 218 MobiDBLite consensus disorder prediction 172 194 - -
Bhi12g00331 218 PANTHER MADS-BOX PROTEIN SOC1 1 206 - -
Bhi12g00331 218 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Bhi12g00331 218 PANTHER MADS BOX PROTEIN 1 206 - -
Bhi12g00331 218 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Bhi12g00331 218 Coils Coil 121 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g00331 Bhi-Chr12:9514540 Bhi06g00235 Bhi-Chr6:5559278 4.79E-50 dispersed
Bhi12g00330 Bhi-Chr12:9514524 Bhi12g00331 Bhi-Chr12:9514540 2.62E-160 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2586 PF01486 K-box 1.00E-21 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00331 - - bhj:120092764 387.882