Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00340 ATGGCTTCTTCTTCAGGCTTCAACATCTTCTTGGTGGCATTGGTTTTGGCCATCTTCACCAGATCAACGCTCGCTGTGTTCCAACCGAGCCCGTGGAAGCTCGCTCATGCTACCTTTTATGGCGACGAAACTGCCTCCGAGACCATGGGTGGAGCTTGTGGGTATGGCAACTTGTTTACGAACGGCTATGGAACTGATACAGTGGCGTTGAGTTCGACACTGTTCAACAATGGCTACGCTTGTGGGACTTGCTTTCAAATCAAATGCGTGCAGTCGAAGGCGTGCTACGCGAATGTGCCATTCACGACTGTGACGGCGACTAACCTGTGCCCACCAAATTGGTCACAGAACTCGAACGCCGGTGGCTGGTGCAACCCACCAAGAGTTCACTTCGACATGGCCAAGCCTGCCTTCATGAAGATCGCTTGGTGGAAGGCCGGAATTGTGCCCGTTCAGTACCGCAGGGTTCCATGTGTGAAGAAAGGAGGAGTTCGATTTAGCTTGCAAGGAAATGGATATTGGTTATTGGTGTATGTGATGAACGTAGGAGGAGGAGGTGATGTCTATTCAATGGCAGTGAAAGGAAGCAAAACAGGATGGATAACAATGAGCCATAATTGGGGAGCTTCATATCAAGCTTTTGCTTCATTGGGTGGCCAATCCCTCTCCTTTAGAATCACTTCTTACACAACAAGAGAAACCCTTACTTTATGGAATGTCCTTCCTTCAAATTGGCAAGTTGGGTTGACTTACAATTCTAATCTCAACTTCCGTTGA 777 48.39 MASSSGFNIFLVALVLAIFTRSTLAVFQPSPWKLAHATFYGDETASETMGGACGYGNLFTNGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQNSNAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRRVPCVKKGGVRFSLQGNGYWLLVYVMNVGGGGDVYSMAVKGSKTGWITMSHNWGASYQAFASLGGQSLSFRITSYTTRETLTLWNVLPSNWQVGLTYNSNLNFR 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10448928 10452113 - XM_039020026.1 Bhi12g00340 52152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00340 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 163 IPR007112 -
Bhi12g00340 258 PANTHER EXPANSIN-A7 9 258 - -
Bhi12g00340 258 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
Bhi12g00340 258 PANTHER EXPANSIN-A15 9 258 IPR002963 GO:0009664
Bhi12g00340 258 Pfam Expansin C-terminal domain 164 242 IPR007117 -
Bhi12g00340 258 Pfam Lytic transglycolase 67 153 IPR009009 -
Bhi12g00340 258 SMART dpbb_1 67 153 IPR007112 -
Bhi12g00340 258 Gene3D - 17 158 IPR036908 -
Bhi12g00340 258 Gene3D - 163 258 IPR036749 -
Bhi12g00340 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Bhi12g00340 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Bhi12g00340 258 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Bhi12g00340 258 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Bhi12g00340 258 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Bhi12g00340 258 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Bhi12g00340 258 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Bhi12g00340 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Bhi12g00340 258 SUPERFAMILY Barwin-like endoglucanases 31 181 IPR036908 -
Bhi12g00340 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Bhi12g00340 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Bhi12g00340 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Bhi12g00340 258 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Bhi12g00340 258 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Bhi12g00340 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bhi11g00352 Bhi12g00340 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00352 Bhi-Chr11:8260932 Bhi12g00340 Bhi-Chr12:10448928 4.17E-154 dispersed
Bhi11g01337 Bhi-Chr11:39495196 Bhi12g00340 Bhi-Chr12:10448928 1.47E-132 dispersed
Bhi12g00340 Bhi-Chr12:10448928 Bhi03g02000 Bhi-Chr3:42858229 5.06E-94 dispersed
Bhi12g00340 Bhi-Chr12:10448928 Bhi06g00957 Bhi-Chr6:26359497 4.02E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00340 - - csv:101221231 528.48