Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00343 ATGTCGGGCCCAAAAATGAGGTAAACCATATGATCAACCTTTAGGAATATATGGTGAGATCAATAACGATCAACCTTGCATGTACCGTATTTTAAAACTATATTTAAATTTTGGAGTATACGGTGCCTTCTAATTTTCTATCACTAATAAAATCAAGTCTAAACTTTTAGGAGCAAAAATGTAATTTTTTTCATAAAAGACAATTAAGATCACTCGTAGTTTAACAGTAACTTTGAGGGAAGTTGGCTTGTATTTCAATAGATGGCGGATTTGGCATTGATGTTTGGAGGCATCATCAAGATTCAAACTTTTCCATTTAGTCTTATTTAATATAAAGAATTTGTATATGAGTTCTCTGATTTAATAATTCTAATCCACGAACCACAAAAATTATTTTTCTATTATTCTCCAAAGGTTTGCAACAAAATGTCCTATATGGATATCAGGTTTGCCAATTCTTGTAATATGTCAAGTTACATAATGACAATTCTAAAGCCAAATAAACAAATAGTTAACAAAGTTAATGTATCATATCATACATATTGCCATCAATATGAATCATTCAACTTAACCAGCCAAAACTCCTCGCAGGCCTAAGCACAAACCTCCAATGGCAATATGTTAATGCCTTTGAAAGTTTCTTACACAACCGCCGGCCATGACTGCCTCCCTTTCTCCCATATAAAACTTCCTCTTTGTCTTCATACTTACATTGTCCATGTGAAGAAACCAGAGACAGCCGATGATCTCGAGAGCTGGCACAGGTCATTCTTACCGACGAGTTTGGAGAACTCGGAGGAGCAACCATCGTTGCTGTATTCGTACCGAAATGTGATGAGTGGTTTTGCTGCAAGACTTACTGAAGAACAAGTGAAAGCGATGGAAGAGAAGGATGGTTTTGTGTCAGCTAGGCGTGAAAAGATATTACATTTGCACACAACTCACACCCCTGATTTTCTAGGATTGAATCGTCAATTTGGGTTTTGGAAAGATTCAAACTTTGGAAAGGGAGTGATCATAGGAGTATTGGATGGTGGAATTACACCAAACCATCCTTCATTTGATGATGTGGGAATGCCCCAACCTCCAACCAAATGGAAAGGAAGATGTGAGTTTAATTTCTCTGCTTGTAACAACAAGCTTATAGGTGCAAGATCTTTTAATCTCGCATCAAAAGCCTTAAAGGGACATGCAACAACGATGGATGACTCTCCTATTGATGAAGATGGCCACGGAACTCACACAGCAAGCACCGCTGCTGGTACTTTCATCGATGGCGCCGAGGCATTAGGAAACGCTATAGGTACCGCTNCTGGGATGGCACCTCTAGCCCACCTTGCCATTTACAAAGTTTGCTTTGGAGAAGATTGCCCTGATACCGACATTCTTGCTGCACTCGATGCCGCTGTTGAAGACGGTGTTGACGTGCTCTCACTCTCGCTCGGGAGCCCATCAGCACCATTTTTCGAAGACAGTATAGCCATAGGCGCATTCACAGCGATTCAAAAGGGGATTTTTGTAAGGTGCTCAGCTGCTAATTCAGGTCCTTTTAACGCCACATTGTCCAATGAAGCTCCATGGATTTTAACAGTTGCAGCTAGCACAATTGATCGAAGAATCGTAGCGGCTGCAAAGCTCGGAAATGGAGAAGAATTGGATGGTGAATCTCTGTTCCAGCCAAATGATTTCCCACAAACATTCTTGCCACTTGTTTTCCCTGGTGAGAAGAATGAAACGGTTGCATTATGTGGAGAAGGATCATTGAAAAACATTGATGTAAAAGGAAAAGTTGTAGTATGCGAGAGAGGTGGAGGAATAGCAAGAATTGCAAAAGGGGTTGAAGTAAAAAATGCAGGTGGCGCCGCCATGATCCTTCTCAACACAGAATCAGATGGCTTCACTACTGAAGCAGATGCTCATGTTCTTCCGGCAAGCCACGTCAGCCACACAGCGGCGCTGAAAATCAAAGCTTACATAAACTCAACAACATACCCAAAAGCCACAATTGTATTCAAAGGAACCATAATTGGCGATGATTTCTCTCCAGCCATAGCTTCTTTCTCATCTCGAGGTCCTAGTCTTGCGAGCCCCGGCATCTTGAAACCGGACATAACCGGGCCCGGTGTCAGTATTTTAGCAGCATGGCCATTCCCATTAGACAACAACACAAACCCAAAATGAACATTTAACATAGTTTCAGGAACATCCATGTCTTGTCCTCATCTTAGTGGCATTGCAGCTCTGATCAAAAGCTCTCATCCTGATTGGTCACCAGCCGTCATTAAATCCTCTATAATGACAACCGCTAACATAACAAATCTTGAAGGCAACCCAATTGTTGATCAAACTCTGCAGCCGGCTGACTTGTTTGCAACTGGGGCAGGTCATGTAAACCCATCAAAAGCAAACGACCCAGGATTGGTTTATGACATTCAACCTGATGATTATATTCCTTATCTTTGTGGATTAGGATACAAAAATAACCAAGTTTCACTTGTTGCTCATAAACCGGTTGAATGTTTAACAACACCAAGCATTCCAGAAGGAGAACTCAACTACCCGTCATTTACGGTTGAATTAGGACCGCCACAAACATTCACAAGAACGGTTACTAATGTTGGCGGTGGACGTGAAGTTTATACTGTCGTCGTTGAAGCACCAGCAGCGGTTTCTGTAACAGTTAAACCAAGGACGTTAATTTTCTCGGCATTGAACCAAAAAGCGACGTATGCAGTGACGTTTAAGAGAATTGGTTCGATCAGTCCGTCGATTGAGTTTGCTAAAGGCTATATCAAATGGGTTTCAACTAAACACGTCGTTAGAAGTCCGATATCTATTAAGTTCGTATGAGTTTGGTTTCAACATTGATTGACTTGCGTTCAAAGGTGGCAATAAATTGTTGTATAATAAAACCAATATGTTCGTGTGTGTTTGTTCTTTTTGAAGGGTAGG 2952 41.06 MLMPLKVSYTTAGHDCLPFSHIKLPLCLHTYIVHVKKPETADDLESWHRSFLPTSLENSEEQPSLLYSYRNVMSGFAARLTEEQVKAMEEKDGFVSARREKILHLHTTHTPDFLGLNRQFGFWKDSNFGKGVIIGVLDGGITPNHPSFDDVGMPQPPTKWKGRCEFNFSACNNKLIGARSFNLASKALKGHATTMDDSPIDEDGHGTHTASTAAGTFIDGAEALGNAIGTAXGMAPLAHLAIYKVCFGEDCPDTDILAALDAAVEDGVDVLSLSLGSPSAPFFEDSIAIGAFTAIQKGIFVRCSAANSGPFNATLSNEAPWILTVAASTIDRRIVAAAKLGNGEELDGESLFQPNDFPQTFLPLVFPGEKNETVALCGEGSLKNIDVKGKVVVCERGGGIARIAKGVEVKNAGGAAMILLNTESDGFTTEADAHVLPASHVSHTAALKIKAYINSTTYPKATIVFKGTIIGDDFSPAIASFSSRGPSLASPGILKPDITGPGVSILAAWPFPLDNNTNPKXTFNIVSGTSMSCPHLSGIAALIKSSHPDWSPAVIKSSIMTTANITNLEGNPIVDQTLQPADLFATGAGHVNPSKANDPGLVYDIQPDDYIPYLCGLGYKNNQVSLVAHKPVECLTTPSIPEGELNYPSFTVELGPPQTFTRTVTNVGGGREVYTVVVEAPAAVSVTVKPRTLIFSALNQKATYAVTFKRIGSISPSIEFAKGYIKWVSTKHVVRSPISIKFV 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10722852 10725932 - XM_039020159.1 Bhi12g00343 52155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00343 743 Pfam Subtilase family 129 572 IPR000209 GO:0006508|GO:0008236
Bhi12g00343 743 Gene3D Peptidase S8/S53 domain 131 610 IPR036852 GO:0004252|GO:0006508
Bhi12g00343 743 CDD Peptidases_S8_3 103 564 IPR034197 -
Bhi12g00343 743 SUPERFAMILY PA domain 349 481 IPR046450 -
Bhi12g00343 743 CDD PA_subtilisin_like 339 463 - -
Bhi12g00343 743 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 27 106 IPR037045 -
Bhi12g00343 743 Pfam Peptidase inhibitor I9 30 106 IPR010259 -
Bhi12g00343 743 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 25 739 IPR045051 -
Bhi12g00343 743 ProSiteProfiles Serine proteases, subtilase domain profile. 113 597 - -
Bhi12g00343 743 Gene3D - 331 470 - -
Bhi12g00343 743 Pfam PA domain 377 448 IPR003137 -
Bhi12g00343 743 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 25 739 - -
Bhi12g00343 743 SUPERFAMILY Subtilisin-like 105 601 IPR036852 GO:0004252|GO:0006508
Bhi12g00343 743 Gene3D - 614 742 - -
Bhi12g00343 743 PRINTS Subtilisin serine protease family (S8) signature 129 148 IPR015500 -
Bhi12g00343 743 PRINTS Subtilisin serine protease family (S8) signature 201 214 IPR015500 -
Bhi12g00343 743 PRINTS Subtilisin serine protease family (S8) signature 527 543 IPR015500 -
Bhi12g00343 743 Pfam Fibronectin type-III domain 644 740 IPR041469 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00343 - - - cpep:111786140 1191.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g00343 Bhi-Chr12:10722852 Bhi07g00306 Bhi-Chr7:13915575 0 dispersed
Bhi12g00343 Bhi-Chr12:10722852 Bhi12g00346 Bhi-Chr12:10803699 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g434 . . . . . . . . . Cmo16g01045 Cma02g01498 . Car02g01261 . . . Cpe05g00291 . . . . . . . . . . . . . . Cone8ag0344 . . . . Csa05g00344 Chy09g01163 . . . Bda07g00509 . . . . . . Cmo02g01539 . . . . . . . Bhi12g00343 . . . Hepe06g1605 . Lcy12g1726 . . . . . . . Lsi09g00337 . . Cme09g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00343 Bhi_Chr12 FPKM 0.0 0.0 0.0 0.408619 1.485057 1.059737 1.418574 0.0 0.253786 0.0