Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00346 CCTTTCTTCTGTATCTTTTTCTTGCTTAATTTTCATGGCATTGTTGCCATGAAATCTGAGCTTTCAGGTACTTCCAACCAAATCAAACTACAGACCTACATTGTCCACGTGAAGGAGTCAGAGCTCAGGATTTTGGGTGATGCCATTGATCTAGAAAGTTGGTATACCTCATTCTTACCAGAAACGATCAAGACGTCGAATGAACAGTCGCGGTTACTTTATTCATTTCGAAATGTAATGAGTGGTTTTTCTGCAAGACTTACAGAAGAAGTTAAAGCCATGGAAGAGAAGGAGGGTTTCATCTCAGCCAGGCCTGAAACCATATTGAATTTGCACACAACTCATACTCCTGAATATTTGGGGTTGAACCAACAATTTGGATTGTGGAAAGATTCAAATTTTGGAAAAGGAGTAATTATAGGAGTGTTGGATACTGGAATTTCTCCTGATCATCCTTCGTTTAATGATGATGGAATGCCACAACCACCAGCTAAATGGAAAGGAAGATGCGAGTTTGGTGCTTCCATTTGTAATAACAAGTTGATTGGTGCAAGAACTTTCAATCGTGCTAATAGTGCTTTGATGGGGGAATCGCCAATTGATGAAAATGGACACGGCACACACACAGCAAGCACAGCTGCAGGCACTTTCGTTGAGGGTGCTGAAGCTTTGGGAAATGCAAGAGGCAAGGCAGTTGGAATGGCACCTTTAGCTCATCTAGCAATGTATAAAGTTTGTTCTCCAAAAGGCTGCTCGAGTAGCGATATACTCGCTGCATTAGATGCTGCAATCCACGATGGTGTCGATGTTCTCTCACTCTCCCTCGGTGCCCCTTCGAGACCGTTTTATATCGACAATATTGCCATAGGCGCATTTGCAGCCATTAAAATGGGAATTTTTGTGAGTTGTTCAGCTGGGAATTCAGGCCCTTCCAAAAGCACATTAGCCAATGAAGCACCTTGGATTCTAACCGTTGGAGCAAGCACTATCGATCGAACAATTATGGCATTAGCAAGGCTTGGAAATGGTGAAGTCCATGTCGGTGAATCTCTCTTCCAGCCAAGAGATTTCCCATCATCATTCTTACCACTTGTATACGCTGGTAGCAGTGGAGTCAAAGGGTCTGAATTTTGTGTTCAAGGCTCACTTACAAACCTGAATGTGAAAGGAAAAATGGTGGTATGTGAAAGAGGAGGAGGAATAGGCAGAATTGCAAAAGGGATGGTAGTGAAAAATGCTGGTGGAGCTGCCATGATTATTATAAACCAAAAAGCAGATGAGTTCAGTACATTAGCCGAAGCTCATATTCTTCCAGCAACCCATGTAAGCTATGAAGCTGGACTCAAAATCAAATCATATATACGTTCATCACAGAATCCAATGGCATCAATTTCATTTGAAGGAACTCTAATTGGAAGCAGAGCCACAACTTTCTCCCCTGCTATGGCTTCTTTTTCTTCTCGAGGACCCTGCCTCCCTAGCCCTGGGATCTTGAAACCTGACATAACAGGCCCTGGAGTCAACATTCTCGCAGCTTGGCCATTCTCATTAGACAACAACACAAACAAAAAATCAACATTCAACGTTATCTCAGGAACTTCAATGTCTTGTCCTCATTTAAGTGGAATTGCAGCTTTGATCAAGAGTGTTCATCCTAATTGGTCCCCTGCTGCCATTAAATCTGCCATTATGACCTCTGCAGATGTAAGAAATCGTCAAGGCAGACCAATCGTGGATCAAGATTTGAAACCGGCGAACTTTTTTGCTATGGGGTCTGGACATGTCAATCCATCAAAAGCAGCTGACCCAGGATTGGTTTATGACATTCAGCCTGATGATTACATTCCTTATCTTTGCGGTTTGTATAGTGATGCCCAAGTCTCGATTATTGTTCGTAGAAAAGTAACTTGTTCGACGATATCAAGAATACGAGAAGGGGATTTGAATTATCCTTCATTTGCTGTGACGTTGGGACCTTCACAGATGTTTAATAGAACAGTGACAAATGTGGGTGATGCAAACTCAATTTATTCCGCCATTGTTGAGGCACCAATTGGAGTTTCAGTGAAGGTTACACCAAACAATTTGAAATTCTCGAGGGTGATTGAAAAAGTGACATATTCGGTAACATTCAGCCGGGATGATTTAGTTAGAACAACGAGTGAATTCAGTGAAGGGTATCTCATATGGGTATCTAACAAACACATGGTGAGGAGTCCAATCTCTGTGAAGCTCAAATAA 2241 42.08 MKSELSGTSNQIKLQTYIVHVKESELRILGDAIDLESWYTSFLPETIKTSNEQSRLLYSFRNVMSGFSARLTEEVKAMEEKEGFISARPETILNLHTTHTPEYLGLNQQFGLWKDSNFGKGVIIGVLDTGISPDHPSFNDDGMPQPPAKWKGRCEFGASICNNKLIGARTFNRANSALMGESPIDENGHGTHTASTAAGTFVEGAEALGNARGKAVGMAPLAHLAMYKVCSPKGCSSSDILAALDAAIHDGVDVLSLSLGAPSRPFYIDNIAIGAFAAIKMGIFVSCSAGNSGPSKSTLANEAPWILTVGASTIDRTIMALARLGNGEVHVGESLFQPRDFPSSFLPLVYAGSSGVKGSEFCVQGSLTNLNVKGKMVVCERGGGIGRIAKGMVVKNAGGAAMIIINQKADEFSTLAEAHILPATHVSYEAGLKIKSYIRSSQNPMASISFEGTLIGSRATTFSPAMASFSSRGPCLPSPGILKPDITGPGVNILAAWPFSLDNNTNKKSTFNVISGTSMSCPHLSGIAALIKSVHPNWSPAAIKSAIMTSADVRNRQGRPIVDQDLKPANFFAMGSGHVNPSKAADPGLVYDIQPDDYIPYLCGLYSDAQVSIIVRRKVTCSTISRIREGDLNYPSFAVTLGPSQMFNRTVTNVGDANSIYSAIVEAPIGVSVKVTPNNLKFSRVIEKVTYSVTFSRDDLVRTTSEFSEGYLIWVSNKHMVRSPISVKLK 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10803699 10805939 + XM_039050524.1 Bhi12g00346 52158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00346 730 ProSiteProfiles Serine proteases, subtilase domain profile. 103 585 - -
Bhi12g00346 730 PRINTS Subtilisin serine protease family (S8) signature 119 138 IPR015500 -
Bhi12g00346 730 PRINTS Subtilisin serine protease family (S8) signature 185 198 IPR015500 -
Bhi12g00346 730 PRINTS Subtilisin serine protease family (S8) signature 515 531 IPR015500 -
Bhi12g00346 730 Gene3D Peptidase S8/S53 domain 121 598 IPR036852 GO:0004252|GO:0006508
Bhi12g00346 730 CDD PA_subtilisin_like 323 448 - -
Bhi12g00346 730 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 124 135 IPR023827 -
Bhi12g00346 730 SUPERFAMILY PA domain 364 431 IPR046450 -
Bhi12g00346 730 Pfam Subtilase family 119 555 IPR000209 GO:0006508|GO:0008236
Bhi12g00346 730 Gene3D - 602 729 - -
Bhi12g00346 730 Pfam Peptidase inhibitor I9 16 95 IPR010259 -
Bhi12g00346 730 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 11 727 - -
Bhi12g00346 730 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 2 96 IPR037045 -
Bhi12g00346 730 Gene3D - 315 455 - -
Bhi12g00346 730 Pfam PA domain 347 434 IPR003137 -
Bhi12g00346 730 CDD Peptidases_S8_3 93 552 IPR034197 -
Bhi12g00346 730 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 11 727 IPR045051 -
Bhi12g00346 730 SUPERFAMILY Subtilisin-like 95 589 IPR036852 GO:0004252|GO:0006508
Bhi12g00346 730 Pfam Fibronectin type-III domain 631 727 IPR041469 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00346 - - - csv:101217847 1206.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g00346 Bhi-Chr12:10803699 Bhi07g00306 Bhi-Chr7:13915575 0 dispersed
Bhi12g00343 Bhi-Chr12:10722852 Bhi12g00346 Bhi-Chr12:10803699 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g437 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00348 Chy09g01158 . . . . . . . . . . . . . . . . . . Bhi12g00346 . . . . . Lcy12g1729 . . . . . . . Lsi09g00345 . . Cme09g01692
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00346 Bhi_Chr12 FPKM 12.390663 15.423615 11.023966 10.966718 12.179101 10.706575 9.00283 16.327858 15.745486 16.249712